Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6077

Experiment: Cadmium chloride hemipentahydrate 0.000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6076 and Pf6N2E2_6077 are separated by 159 nucleotidesPf6N2E2_6077 and Pf6N2E2_6078 are separated by 45 nucleotides Pf6N2E2_6076 - Transporter, LysE family, at 6,895,613 to 6,896,227 _6076 Pf6N2E2_6077 - Cysteine desulfurase (EC 2.8.1.7), at 6,896,387 to 6,897,553 _6077 Pf6N2E2_6078 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 6,897,599 to 6,899,407 _6078 Position (kb) 6896 6897 6898Strain fitness (log2 ratio) -2 -1 0 1at 6895.397 kb on + strandat 6895.397 kb on + strandat 6895.398 kb on - strandat 6895.398 kb on - strandat 6895.420 kb on - strandat 6895.519 kb on - strandat 6895.753 kb on + strand, within Pf6N2E2_6076at 6895.756 kb on + strand, within Pf6N2E2_6076at 6895.756 kb on + strand, within Pf6N2E2_6076at 6895.757 kb on - strand, within Pf6N2E2_6076at 6895.820 kb on + strand, within Pf6N2E2_6076at 6895.820 kb on + strand, within Pf6N2E2_6076at 6895.820 kb on + strand, within Pf6N2E2_6076at 6895.820 kb on + strand, within Pf6N2E2_6076at 6895.820 kb on + strand, within Pf6N2E2_6076at 6895.821 kb on - strand, within Pf6N2E2_6076at 6895.821 kb on - strand, within Pf6N2E2_6076at 6895.832 kb on + strand, within Pf6N2E2_6076at 6895.832 kb on + strand, within Pf6N2E2_6076at 6895.832 kb on + strand, within Pf6N2E2_6076at 6895.832 kb on + strand, within Pf6N2E2_6076at 6895.832 kb on + strand, within Pf6N2E2_6076at 6895.832 kb on + strand, within Pf6N2E2_6076at 6895.833 kb on - strand, within Pf6N2E2_6076at 6895.833 kb on - strand, within Pf6N2E2_6076at 6895.833 kb on - strand, within Pf6N2E2_6076at 6895.863 kb on - strand, within Pf6N2E2_6076at 6895.871 kb on + strand, within Pf6N2E2_6076at 6895.871 kb on + strand, within Pf6N2E2_6076at 6895.872 kb on - strand, within Pf6N2E2_6076at 6895.930 kb on + strand, within Pf6N2E2_6076at 6895.930 kb on + strand, within Pf6N2E2_6076at 6895.931 kb on - strand, within Pf6N2E2_6076at 6895.943 kb on + strand, within Pf6N2E2_6076at 6895.943 kb on + strand, within Pf6N2E2_6076at 6895.944 kb on - strand, within Pf6N2E2_6076at 6896.015 kb on + strand, within Pf6N2E2_6076at 6896.015 kb on + strand, within Pf6N2E2_6076at 6896.015 kb on + strand, within Pf6N2E2_6076at 6896.015 kb on + strand, within Pf6N2E2_6076at 6896.015 kb on + strand, within Pf6N2E2_6076at 6896.016 kb on - strand, within Pf6N2E2_6076at 6896.016 kb on - strand, within Pf6N2E2_6076at 6896.016 kb on - strand, within Pf6N2E2_6076at 6896.016 kb on - strand, within Pf6N2E2_6076at 6896.034 kb on - strand, within Pf6N2E2_6076at 6896.042 kb on - strand, within Pf6N2E2_6076at 6896.198 kb on + strandat 6896.198 kb on + strandat 6896.254 kb on + strandat 6896.326 kb on + strandat 6896.327 kb on - strandat 6896.332 kb on + strandat 6896.405 kb on + strandat 6896.405 kb on + strandat 6896.406 kb on - strandat 6897.011 kb on + strand, within Pf6N2E2_6077at 6897.011 kb on + strand, within Pf6N2E2_6077at 6897.011 kb on + strand, within Pf6N2E2_6077at 6897.011 kb on + strand, within Pf6N2E2_6077at 6897.012 kb on - strand, within Pf6N2E2_6077at 6897.012 kb on - strand, within Pf6N2E2_6077at 6897.038 kb on + strand, within Pf6N2E2_6077at 6897.038 kb on + strand, within Pf6N2E2_6077at 6897.038 kb on + strand, within Pf6N2E2_6077at 6897.039 kb on - strand, within Pf6N2E2_6077at 6897.253 kb on + strand, within Pf6N2E2_6077at 6897.253 kb on + strand, within Pf6N2E2_6077at 6897.253 kb on + strand, within Pf6N2E2_6077at 6897.254 kb on - strand, within Pf6N2E2_6077at 6897.254 kb on - strand, within Pf6N2E2_6077at 6897.254 kb on - strand, within Pf6N2E2_6077at 6897.254 kb on - strand, within Pf6N2E2_6077at 6897.578 kb on + strandat 6897.578 kb on + strandat 6897.579 kb on - strandat 6897.781 kb on + strand, within Pf6N2E2_6078at 6898.094 kb on + strand, within Pf6N2E2_6078at 6898.094 kb on + strand, within Pf6N2E2_6078at 6898.094 kb on + strand, within Pf6N2E2_6078at 6898.095 kb on - strand, within Pf6N2E2_6078at 6898.095 kb on - strand, within Pf6N2E2_6078at 6898.095 kb on - strand, within Pf6N2E2_6078at 6898.373 kb on + strand, within Pf6N2E2_6078at 6898.374 kb on - strand, within Pf6N2E2_6078

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M
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6,895,397 + +0.1
6,895,397 + +1.4
6,895,398 - -0.1
6,895,398 - -0.9
6,895,420 - -0.6
6,895,519 - -1.2
6,895,753 + Pf6N2E2_6076 0.23 -0.0
6,895,756 + Pf6N2E2_6076 0.23 +0.4
6,895,756 + Pf6N2E2_6076 0.23 -0.2
6,895,757 - Pf6N2E2_6076 0.23 -0.2
6,895,820 + Pf6N2E2_6076 0.34 +0.7
6,895,820 + Pf6N2E2_6076 0.34 +0.9
6,895,820 + Pf6N2E2_6076 0.34 +0.7
6,895,820 + Pf6N2E2_6076 0.34 +0.4
6,895,820 + Pf6N2E2_6076 0.34 +0.7
6,895,821 - Pf6N2E2_6076 0.34 +0.2
6,895,821 - Pf6N2E2_6076 0.34 +0.2
6,895,832 + Pf6N2E2_6076 0.36 +1.2
6,895,832 + Pf6N2E2_6076 0.36 +0.5
6,895,832 + Pf6N2E2_6076 0.36 +0.1
6,895,832 + Pf6N2E2_6076 0.36 +0.1
6,895,832 + Pf6N2E2_6076 0.36 -0.4
6,895,832 + Pf6N2E2_6076 0.36 +0.6
6,895,833 - Pf6N2E2_6076 0.36 +1.1
6,895,833 - Pf6N2E2_6076 0.36 -1.0
6,895,833 - Pf6N2E2_6076 0.36 -0.2
6,895,863 - Pf6N2E2_6076 0.41 +0.6
6,895,871 + Pf6N2E2_6076 0.42 -1.4
6,895,871 + Pf6N2E2_6076 0.42 +0.4
6,895,872 - Pf6N2E2_6076 0.42 -0.1
6,895,930 + Pf6N2E2_6076 0.52 -0.0
6,895,930 + Pf6N2E2_6076 0.52 -0.4
6,895,931 - Pf6N2E2_6076 0.52 +0.8
6,895,943 + Pf6N2E2_6076 0.54 +1.0
6,895,943 + Pf6N2E2_6076 0.54 -0.3
6,895,944 - Pf6N2E2_6076 0.54 -2.4
6,896,015 + Pf6N2E2_6076 0.65 +0.3
6,896,015 + Pf6N2E2_6076 0.65 +0.9
6,896,015 + Pf6N2E2_6076 0.65 +0.9
6,896,015 + Pf6N2E2_6076 0.65 +0.9
6,896,015 + Pf6N2E2_6076 0.65 +1.2
6,896,016 - Pf6N2E2_6076 0.66 +0.7
6,896,016 - Pf6N2E2_6076 0.66 +0.2
6,896,016 - Pf6N2E2_6076 0.66 -0.9
6,896,016 - Pf6N2E2_6076 0.66 -0.2
6,896,034 - Pf6N2E2_6076 0.68 +1.7
6,896,042 - Pf6N2E2_6076 0.70 -0.3
6,896,198 + -0.2
6,896,198 + +1.7
6,896,254 + +1.2
6,896,326 + +1.6
6,896,327 - -0.9
6,896,332 + +1.1
6,896,405 + -0.3
6,896,405 + -0.2
6,896,406 - -0.9
6,897,011 + Pf6N2E2_6077 0.53 -0.8
6,897,011 + Pf6N2E2_6077 0.53 -0.7
6,897,011 + Pf6N2E2_6077 0.53 -0.0
6,897,011 + Pf6N2E2_6077 0.53 +0.2
6,897,012 - Pf6N2E2_6077 0.54 -1.4
6,897,012 - Pf6N2E2_6077 0.54 -0.6
6,897,038 + Pf6N2E2_6077 0.56 -0.6
6,897,038 + Pf6N2E2_6077 0.56 -1.5
6,897,038 + Pf6N2E2_6077 0.56 -0.9
6,897,039 - Pf6N2E2_6077 0.56 -1.5
6,897,253 + Pf6N2E2_6077 0.74 -1.2
6,897,253 + Pf6N2E2_6077 0.74 +1.1
6,897,253 + Pf6N2E2_6077 0.74 +0.1
6,897,254 - Pf6N2E2_6077 0.74 +0.2
6,897,254 - Pf6N2E2_6077 0.74 -1.0
6,897,254 - Pf6N2E2_6077 0.74 -1.0
6,897,254 - Pf6N2E2_6077 0.74 -0.8
6,897,578 + +0.1
6,897,578 + +0.6
6,897,579 - -0.1
6,897,781 + Pf6N2E2_6078 0.10 +0.3
6,898,094 + Pf6N2E2_6078 0.27 -0.2
6,898,094 + Pf6N2E2_6078 0.27 -0.2
6,898,094 + Pf6N2E2_6078 0.27 -0.1
6,898,095 - Pf6N2E2_6078 0.27 +0.1
6,898,095 - Pf6N2E2_6078 0.27 -1.5
6,898,095 - Pf6N2E2_6078 0.27 -0.2
6,898,373 + Pf6N2E2_6078 0.43 +1.2
6,898,374 - Pf6N2E2_6078 0.43 -1.0

Or see this region's nucleotide sequence