Experiment: Cadmium chloride hemipentahydrate 0.000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5811 and Pf6N2E2_5812 are separated by 333 nucleotides Pf6N2E2_5812 and Pf6N2E2_5813 are separated by 81 nucleotides Pf6N2E2_5813 and Pf6N2E2_5814 are separated by 85 nucleotides Pf6N2E2_5814 and Pf6N2E2_5815 are separated by 8 nucleotides
Pf6N2E2_5811 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 6,630,319 to 6,631,668
_5811
Pf6N2E2_5812 - Transcriptional regulator, MarR family, at 6,632,002 to 6,632,448
_5812
Pf6N2E2_5813 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,632,530 to 6,633,696
_5813
Pf6N2E2_5814 - Glutaredoxin, at 6,633,782 to 6,634,249
_5814
Pf6N2E2_5815 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 6,634,258 to 6,634,803
_5815
Position (kb)
6632
6633
6634 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6631.619 kb on - strand at 6631.675 kb on + strand at 6631.676 kb on - strand at 6631.676 kb on - strand at 6631.676 kb on - strand at 6631.691 kb on + strand at 6631.691 kb on + strand at 6631.691 kb on + strand at 6631.692 kb on - strand at 6631.692 kb on - strand at 6631.697 kb on + strand at 6631.698 kb on - strand at 6631.698 kb on - strand at 6631.713 kb on + strand at 6631.749 kb on + strand at 6631.749 kb on + strand at 6631.749 kb on + strand at 6631.763 kb on + strand at 6631.763 kb on + strand at 6631.763 kb on + strand at 6631.763 kb on + strand at 6631.763 kb on + strand at 6631.764 kb on - strand at 6631.764 kb on - strand at 6631.764 kb on - strand at 6631.764 kb on - strand at 6631.830 kb on - strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.871 kb on + strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.872 kb on - strand at 6631.873 kb on + strand at 6631.873 kb on + strand at 6631.873 kb on + strand at 6631.873 kb on + strand at 6631.874 kb on - strand at 6631.874 kb on - strand at 6631.981 kb on + strand at 6631.982 kb on - strand at 6631.982 kb on - strand at 6631.982 kb on - strand at 6631.982 kb on - strand at 6631.982 kb on - strand at 6632.456 kb on + strand at 6632.693 kb on - strand, within Pf6N2E2_5813 at 6632.872 kb on + strand, within Pf6N2E2_5813 at 6632.872 kb on + strand, within Pf6N2E2_5813 at 6632.873 kb on - strand, within Pf6N2E2_5813 at 6632.998 kb on + strand, within Pf6N2E2_5813 at 6632.998 kb on + strand, within Pf6N2E2_5813 at 6632.998 kb on + strand, within Pf6N2E2_5813 at 6632.999 kb on - strand, within Pf6N2E2_5813 at 6633.184 kb on + strand, within Pf6N2E2_5813 at 6633.185 kb on - strand, within Pf6N2E2_5813 at 6633.233 kb on - strand, within Pf6N2E2_5813 at 6633.233 kb on - strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.452 kb on + strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.453 kb on - strand, within Pf6N2E2_5813 at 6633.810 kb on + strand at 6633.810 kb on + strand at 6633.811 kb on - strand at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.834 kb on + strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.835 kb on - strand, within Pf6N2E2_5814 at 6633.956 kb on + strand, within Pf6N2E2_5814 at 6634.017 kb on + strand, within Pf6N2E2_5814 at 6634.157 kb on - strand, within Pf6N2E2_5814 at 6634.160 kb on - strand, within Pf6N2E2_5814 at 6634.160 kb on - strand, within Pf6N2E2_5814 at 6634.160 kb on - strand, within Pf6N2E2_5814 at 6634.195 kb on + strand, within Pf6N2E2_5814 at 6634.196 kb on - strand, within Pf6N2E2_5814 at 6634.259 kb on + strand at 6634.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M remove 6,631,619 - +0.4 6,631,675 + -0.4 6,631,676 - -0.2 6,631,676 - -0.4 6,631,676 - -0.3 6,631,691 + +0.3 6,631,691 + +0.1 6,631,691 + +1.2 6,631,692 - -0.1 6,631,692 - -0.5 6,631,697 + +0.7 6,631,698 - +1.4 6,631,698 - -0.7 6,631,713 + +0.4 6,631,749 + -0.2 6,631,749 + -0.1 6,631,749 + +0.6 6,631,763 + -0.2 6,631,763 + -0.5 6,631,763 + -1.3 6,631,763 + +1.1 6,631,763 + +1.3 6,631,764 - +0.2 6,631,764 - -0.5 6,631,764 - +0.8 6,631,764 - +0.8 6,631,830 - +0.6 6,631,871 + -0.2 6,631,871 + -0.5 6,631,871 + +1.1 6,631,871 + -1.9 6,631,871 + +0.2 6,631,871 + +0.8 6,631,872 - +2.1 6,631,872 - +0.0 6,631,872 - -0.0 6,631,872 - +2.1 6,631,872 - +0.1 6,631,872 - -0.5 6,631,872 - +0.4 6,631,873 + -0.2 6,631,873 + -0.2 6,631,873 + +0.4 6,631,873 + +0.6 6,631,874 - +0.4 6,631,874 - +0.0 6,631,981 + -1.0 6,631,982 - +0.0 6,631,982 - -0.5 6,631,982 - +0.3 6,631,982 - +0.2 6,631,982 - -1.2 6,632,456 + -0.0 6,632,693 - Pf6N2E2_5813 0.14 -0.2 6,632,872 + Pf6N2E2_5813 0.29 -0.2 6,632,872 + Pf6N2E2_5813 0.29 -0.4 6,632,873 - Pf6N2E2_5813 0.29 -1.3 6,632,998 + Pf6N2E2_5813 0.40 +0.2 6,632,998 + Pf6N2E2_5813 0.40 +0.2 6,632,998 + Pf6N2E2_5813 0.40 -0.2 6,632,999 - Pf6N2E2_5813 0.40 -0.6 6,633,184 + Pf6N2E2_5813 0.56 +1.5 6,633,185 - Pf6N2E2_5813 0.56 +0.3 6,633,233 - Pf6N2E2_5813 0.60 +1.1 6,633,233 - Pf6N2E2_5813 0.60 -1.3 6,633,452 + Pf6N2E2_5813 0.79 -0.9 6,633,452 + Pf6N2E2_5813 0.79 +0.1 6,633,452 + Pf6N2E2_5813 0.79 +0.8 6,633,452 + Pf6N2E2_5813 0.79 +0.8 6,633,452 + Pf6N2E2_5813 0.79 -0.1 6,633,452 + Pf6N2E2_5813 0.79 -0.3 6,633,453 - Pf6N2E2_5813 0.79 -0.3 6,633,453 - Pf6N2E2_5813 0.79 +0.5 6,633,453 - Pf6N2E2_5813 0.79 +1.4 6,633,453 - Pf6N2E2_5813 0.79 +0.1 6,633,453 - Pf6N2E2_5813 0.79 +0.3 6,633,453 - Pf6N2E2_5813 0.79 -0.3 6,633,453 - Pf6N2E2_5813 0.79 -1.5 6,633,810 + +0.5 6,633,810 + +1.1 6,633,811 - +0.4 6,633,834 + Pf6N2E2_5814 0.11 +0.9 6,633,834 + Pf6N2E2_5814 0.11 -0.6 6,633,834 + Pf6N2E2_5814 0.11 -0.3 6,633,834 + Pf6N2E2_5814 0.11 +0.1 6,633,834 + Pf6N2E2_5814 0.11 -0.8 6,633,834 + Pf6N2E2_5814 0.11 -1.9 6,633,834 + Pf6N2E2_5814 0.11 +0.7 6,633,834 + Pf6N2E2_5814 0.11 -0.6 6,633,834 + Pf6N2E2_5814 0.11 -0.2 6,633,834 + Pf6N2E2_5814 0.11 +0.5 6,633,834 + Pf6N2E2_5814 0.11 +2.0 6,633,834 + Pf6N2E2_5814 0.11 +0.4 6,633,834 + Pf6N2E2_5814 0.11 +1.4 6,633,834 + Pf6N2E2_5814 0.11 -0.4 6,633,834 + Pf6N2E2_5814 0.11 +0.0 6,633,834 + Pf6N2E2_5814 0.11 +1.1 6,633,834 + Pf6N2E2_5814 0.11 -0.1 6,633,834 + Pf6N2E2_5814 0.11 +0.4 6,633,834 + Pf6N2E2_5814 0.11 +0.8 6,633,835 - Pf6N2E2_5814 0.11 +0.5 6,633,835 - Pf6N2E2_5814 0.11 +0.6 6,633,835 - Pf6N2E2_5814 0.11 +0.5 6,633,835 - Pf6N2E2_5814 0.11 -0.8 6,633,835 - +1.4 6,633,835 - Pf6N2E2_5814 0.11 +1.2 6,633,835 - Pf6N2E2_5814 0.11 +0.1 6,633,835 - Pf6N2E2_5814 0.11 -0.4 6,633,835 - Pf6N2E2_5814 0.11 +0.2 6,633,835 - Pf6N2E2_5814 0.11 -0.6 6,633,835 - Pf6N2E2_5814 0.11 +0.9 6,633,956 + Pf6N2E2_5814 0.37 -0.0 6,634,017 + Pf6N2E2_5814 0.50 -2.6 6,634,157 - Pf6N2E2_5814 0.80 -0.2 6,634,160 - Pf6N2E2_5814 0.81 +0.4 6,634,160 - Pf6N2E2_5814 0.81 -0.5 6,634,160 - Pf6N2E2_5814 0.81 +0.5 6,634,195 + Pf6N2E2_5814 0.88 -0.2 6,634,196 - Pf6N2E2_5814 0.88 -0.2 6,634,259 + +0.4 6,634,260 - +0.0
Or see this region's nucleotide sequence