Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2936

Experiment: Cadmium chloride hemipentahydrate 0.000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2935 and Pf6N2E2_2936 are separated by 148 nucleotidesPf6N2E2_2936 and Pf6N2E2_2937 are separated by 266 nucleotides Pf6N2E2_2935 - NAD(FAD)-utilizing dehydrogenase, sll0175 homolog, at 3,425,682 to 3,427,295 _2935 Pf6N2E2_2936 - Cysteine synthase (EC 2.5.1.47), at 3,427,444 to 3,428,538 _2936 Pf6N2E2_2937 - Na+/H+ antiporter NhaA type, at 3,428,805 to 3,429,992 _2937 Position (kb) 3427 3428 3429Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3426.519 kb on + strand, within Pf6N2E2_2935at 3426.519 kb on + strand, within Pf6N2E2_2935at 3426.520 kb on - strand, within Pf6N2E2_2935at 3426.520 kb on - strand, within Pf6N2E2_2935at 3426.520 kb on - strand, within Pf6N2E2_2935at 3426.520 kb on - strand, within Pf6N2E2_2935at 3426.520 kb on - strand, within Pf6N2E2_2935at 3426.520 kb on - strand, within Pf6N2E2_2935at 3426.520 kb on - strand, within Pf6N2E2_2935at 3426.520 kb on - strand, within Pf6N2E2_2935at 3426.600 kb on + strand, within Pf6N2E2_2935at 3426.600 kb on + strand, within Pf6N2E2_2935at 3426.633 kb on + strand, within Pf6N2E2_2935at 3426.672 kb on + strand, within Pf6N2E2_2935at 3426.820 kb on - strand, within Pf6N2E2_2935at 3426.893 kb on + strand, within Pf6N2E2_2935at 3426.893 kb on + strand, within Pf6N2E2_2935at 3426.893 kb on + strand, within Pf6N2E2_2935at 3426.893 kb on + strand, within Pf6N2E2_2935at 3426.893 kb on + strand, within Pf6N2E2_2935at 3426.897 kb on + strand, within Pf6N2E2_2935at 3426.897 kb on + strand, within Pf6N2E2_2935at 3426.897 kb on + strand, within Pf6N2E2_2935at 3426.897 kb on + strand, within Pf6N2E2_2935at 3426.898 kb on - strand, within Pf6N2E2_2935at 3426.898 kb on - strand, within Pf6N2E2_2935at 3426.975 kb on + strand, within Pf6N2E2_2935at 3427.209 kb on + strandat 3427.314 kb on + strandat 3427.314 kb on + strandat 3427.314 kb on + strandat 3427.314 kb on + strandat 3427.314 kb on + strandat 3427.315 kb on - strandat 3427.315 kb on - strandat 3427.315 kb on - strandat 3427.315 kb on - strandat 3427.315 kb on - strandat 3427.318 kb on + strandat 3427.318 kb on + strandat 3427.318 kb on + strandat 3427.318 kb on + strandat 3427.319 kb on - strandat 3427.319 kb on - strandat 3427.377 kb on + strandat 3427.532 kb on + strandat 3427.562 kb on + strand, within Pf6N2E2_2936at 3427.563 kb on - strand, within Pf6N2E2_2936at 3427.565 kb on + strand, within Pf6N2E2_2936at 3427.565 kb on + strand, within Pf6N2E2_2936at 3427.566 kb on - strand, within Pf6N2E2_2936at 3427.718 kb on + strand, within Pf6N2E2_2936at 3427.719 kb on - strand, within Pf6N2E2_2936at 3427.719 kb on - strandat 3427.865 kb on + strand, within Pf6N2E2_2936at 3427.865 kb on + strand, within Pf6N2E2_2936at 3427.866 kb on - strand, within Pf6N2E2_2936at 3427.937 kb on + strand, within Pf6N2E2_2936at 3427.937 kb on + strand, within Pf6N2E2_2936at 3427.937 kb on + strand, within Pf6N2E2_2936at 3427.937 kb on + strand, within Pf6N2E2_2936at 3427.937 kb on + strand, within Pf6N2E2_2936at 3427.937 kb on + strand, within Pf6N2E2_2936at 3427.937 kb on + strand, within Pf6N2E2_2936at 3427.938 kb on - strand, within Pf6N2E2_2936at 3427.938 kb on - strand, within Pf6N2E2_2936at 3427.938 kb on - strand, within Pf6N2E2_2936at 3427.938 kb on - strand, within Pf6N2E2_2936at 3427.938 kb on - strand, within Pf6N2E2_2936at 3427.938 kb on - strand, within Pf6N2E2_2936at 3427.959 kb on + strand, within Pf6N2E2_2936at 3428.081 kb on + strand, within Pf6N2E2_2936at 3428.142 kb on - strand, within Pf6N2E2_2936at 3428.142 kb on - strand, within Pf6N2E2_2936at 3428.142 kb on - strand, within Pf6N2E2_2936at 3428.152 kb on - strand, within Pf6N2E2_2936at 3428.183 kb on + strand, within Pf6N2E2_2936at 3428.183 kb on + strand, within Pf6N2E2_2936at 3428.184 kb on - strand, within Pf6N2E2_2936at 3428.267 kb on + strand, within Pf6N2E2_2936at 3428.267 kb on + strand, within Pf6N2E2_2936at 3428.268 kb on - strand, within Pf6N2E2_2936at 3428.268 kb on - strand, within Pf6N2E2_2936at 3428.305 kb on + strand, within Pf6N2E2_2936at 3428.348 kb on + strand, within Pf6N2E2_2936at 3428.417 kb on + strand, within Pf6N2E2_2936at 3428.418 kb on - strand, within Pf6N2E2_2936at 3428.466 kb on + strandat 3428.466 kb on + strandat 3428.466 kb on + strandat 3428.467 kb on - strandat 3428.627 kb on - strandat 3428.659 kb on + strandat 3428.659 kb on + strandat 3428.659 kb on + strandat 3428.659 kb on + strandat 3428.659 kb on + strandat 3428.660 kb on - strandat 3428.669 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M
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3,426,519 + Pf6N2E2_2935 0.52 +0.4
3,426,519 + Pf6N2E2_2935 0.52 +0.8
3,426,520 - Pf6N2E2_2935 0.52 +0.3
3,426,520 - Pf6N2E2_2935 0.52 +0.6
3,426,520 - Pf6N2E2_2935 0.52 +1.2
3,426,520 - Pf6N2E2_2935 0.52 +0.3
3,426,520 - Pf6N2E2_2935 0.52 +0.8
3,426,520 - Pf6N2E2_2935 0.52 -2.1
3,426,520 - Pf6N2E2_2935 0.52 -0.3
3,426,520 - Pf6N2E2_2935 0.52 -0.3
3,426,600 + Pf6N2E2_2935 0.57 +1.2
3,426,600 + Pf6N2E2_2935 0.57 +0.2
3,426,633 + Pf6N2E2_2935 0.59 -0.4
3,426,672 + Pf6N2E2_2935 0.61 +1.2
3,426,820 - Pf6N2E2_2935 0.71 -0.7
3,426,893 + Pf6N2E2_2935 0.75 -0.1
3,426,893 + Pf6N2E2_2935 0.75 -0.2
3,426,893 + Pf6N2E2_2935 0.75 +0.8
3,426,893 + Pf6N2E2_2935 0.75 +0.9
3,426,893 + Pf6N2E2_2935 0.75 -0.4
3,426,897 + Pf6N2E2_2935 0.75 +0.7
3,426,897 + Pf6N2E2_2935 0.75 -0.0
3,426,897 + Pf6N2E2_2935 0.75 +0.8
3,426,897 + Pf6N2E2_2935 0.75 +0.0
3,426,898 - Pf6N2E2_2935 0.75 -0.3
3,426,898 - Pf6N2E2_2935 0.75 +0.3
3,426,975 + Pf6N2E2_2935 0.80 +0.3
3,427,209 + +0.4
3,427,314 + +0.8
3,427,314 + +0.5
3,427,314 + +1.0
3,427,314 + +0.3
3,427,314 + +0.3
3,427,315 - +0.7
3,427,315 - +1.1
3,427,315 - +0.1
3,427,315 - +1.2
3,427,315 - +0.2
3,427,318 + +0.5
3,427,318 + +0.3
3,427,318 + +0.1
3,427,318 + -0.3
3,427,319 - +3.1
3,427,319 - +1.0
3,427,377 + -1.4
3,427,532 + +2.3
3,427,562 + Pf6N2E2_2936 0.11 +3.1
3,427,563 - Pf6N2E2_2936 0.11 +2.9
3,427,565 + Pf6N2E2_2936 0.11 +3.6
3,427,565 + Pf6N2E2_2936 0.11 +3.3
3,427,566 - Pf6N2E2_2936 0.11 +2.9
3,427,718 + Pf6N2E2_2936 0.25 +3.1
3,427,719 - Pf6N2E2_2936 0.25 +3.7
3,427,719 - +3.6
3,427,865 + Pf6N2E2_2936 0.38 +3.5
3,427,865 + Pf6N2E2_2936 0.38 +3.1
3,427,866 - Pf6N2E2_2936 0.39 +2.8
3,427,937 + Pf6N2E2_2936 0.45 +2.6
3,427,937 + Pf6N2E2_2936 0.45 +3.1
3,427,937 + Pf6N2E2_2936 0.45 +3.2
3,427,937 + Pf6N2E2_2936 0.45 +3.3
3,427,937 + Pf6N2E2_2936 0.45 +3.2
3,427,937 + Pf6N2E2_2936 0.45 +3.2
3,427,937 + Pf6N2E2_2936 0.45 +3.3
3,427,938 - Pf6N2E2_2936 0.45 +2.8
3,427,938 - Pf6N2E2_2936 0.45 +2.7
3,427,938 - Pf6N2E2_2936 0.45 +3.2
3,427,938 - Pf6N2E2_2936 0.45 +1.9
3,427,938 - Pf6N2E2_2936 0.45 +3.2
3,427,938 - Pf6N2E2_2936 0.45 +3.2
3,427,959 + Pf6N2E2_2936 0.47 +3.9
3,428,081 + Pf6N2E2_2936 0.58 +3.4
3,428,142 - Pf6N2E2_2936 0.64 +2.9
3,428,142 - Pf6N2E2_2936 0.64 +3.7
3,428,142 - Pf6N2E2_2936 0.64 +2.0
3,428,152 - Pf6N2E2_2936 0.65 +3.3
3,428,183 + Pf6N2E2_2936 0.67 +3.8
3,428,183 + Pf6N2E2_2936 0.67 +3.0
3,428,184 - Pf6N2E2_2936 0.68 +3.1
3,428,267 + Pf6N2E2_2936 0.75 +2.6
3,428,267 + Pf6N2E2_2936 0.75 +3.0
3,428,268 - Pf6N2E2_2936 0.75 +2.7
3,428,268 - Pf6N2E2_2936 0.75 +1.4
3,428,305 + Pf6N2E2_2936 0.79 +3.3
3,428,348 + Pf6N2E2_2936 0.83 +2.8
3,428,417 + Pf6N2E2_2936 0.89 +3.2
3,428,418 - Pf6N2E2_2936 0.89 +3.8
3,428,466 + +2.8
3,428,466 + +2.6
3,428,466 + +2.6
3,428,467 - +2.7
3,428,627 - -0.2
3,428,659 + +3.1
3,428,659 + +3.3
3,428,659 + +2.4
3,428,659 + +2.4
3,428,659 + +3.0
3,428,660 - +0.6
3,428,669 + +3.5

Or see this region's nucleotide sequence