Experiment: Cadmium chloride hemipentahydrate 0.000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2192 and Pf6N2E2_2193 are separated by 13 nucleotides Pf6N2E2_2193 and Pf6N2E2_2194 overlap by 4 nucleotides Pf6N2E2_2194 and Pf6N2E2_2195 are separated by 29 nucleotides Pf6N2E2_2195 and Pf6N2E2_2196 are separated by 122 nucleotides
Pf6N2E2_2192 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) , at 2,597,887 to 2,599,494
_2192
Pf6N2E2_2193 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) , at 2,599,508 to 2,600,326
_2193
Pf6N2E2_2194 - 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) , at 2,600,323 to 2,602,272
_2194
Pf6N2E2_2195 - cI, at 2,602,302 to 2,602,958
_2195
Pf6N2E2_2196 - FIG00953347: hypothetical protein, at 2,603,081 to 2,603,422
_2196
Position (kb)
2600
2601
2602
2603 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2599.339 kb on + strand at 2599.340 kb on - strand at 2599.340 kb on - strand at 2599.360 kb on + strand at 2599.361 kb on - strand at 2599.361 kb on - strand at 2599.361 kb on - strand at 2599.363 kb on + strand at 2599.363 kb on + strand at 2599.363 kb on + strand at 2599.363 kb on + strand at 2599.364 kb on - strand at 2599.364 kb on - strand at 2599.493 kb on - strand at 2599.513 kb on + strand at 2599.745 kb on + strand, within Pf6N2E2_2193 at 2599.790 kb on + strand, within Pf6N2E2_2193 at 2599.790 kb on + strand, within Pf6N2E2_2193 at 2599.790 kb on + strand, within Pf6N2E2_2193 at 2599.790 kb on + strand, within Pf6N2E2_2193 at 2599.790 kb on + strand, within Pf6N2E2_2193 at 2599.791 kb on - strand, within Pf6N2E2_2193 at 2599.791 kb on - strand, within Pf6N2E2_2193 at 2599.791 kb on - strand, within Pf6N2E2_2193 at 2599.791 kb on - strand, within Pf6N2E2_2193 at 2599.791 kb on - strand, within Pf6N2E2_2193 at 2599.864 kb on + strand, within Pf6N2E2_2193 at 2599.997 kb on + strand, within Pf6N2E2_2193 at 2599.998 kb on - strand, within Pf6N2E2_2193 at 2600.201 kb on + strand, within Pf6N2E2_2193 at 2600.512 kb on + strand at 2600.512 kb on + strand at 2600.513 kb on - strand at 2600.513 kb on - strand at 2600.513 kb on - strand at 2600.972 kb on + strand, within Pf6N2E2_2194 at 2600.973 kb on - strand, within Pf6N2E2_2194 at 2600.973 kb on - strand, within Pf6N2E2_2194 at 2601.136 kb on + strand, within Pf6N2E2_2194 at 2601.137 kb on - strand, within Pf6N2E2_2194 at 2601.352 kb on + strand, within Pf6N2E2_2194 at 2601.353 kb on - strand, within Pf6N2E2_2194 at 2601.353 kb on - strand, within Pf6N2E2_2194 at 2601.406 kb on + strand, within Pf6N2E2_2194 at 2601.481 kb on + strand, within Pf6N2E2_2194 at 2601.482 kb on - strand, within Pf6N2E2_2194 at 2601.552 kb on + strand, within Pf6N2E2_2194 at 2601.552 kb on + strand, within Pf6N2E2_2194 at 2601.552 kb on + strand, within Pf6N2E2_2194 at 2601.552 kb on + strand, within Pf6N2E2_2194 at 2601.553 kb on - strand, within Pf6N2E2_2194 at 2601.553 kb on - strand, within Pf6N2E2_2194 at 2601.553 kb on - strand, within Pf6N2E2_2194 at 2601.611 kb on + strand, within Pf6N2E2_2194 at 2601.761 kb on + strand, within Pf6N2E2_2194 at 2601.761 kb on + strand, within Pf6N2E2_2194 at 2601.761 kb on + strand, within Pf6N2E2_2194 at 2601.762 kb on - strand, within Pf6N2E2_2194 at 2601.762 kb on - strand, within Pf6N2E2_2194 at 2601.762 kb on - strand, within Pf6N2E2_2194 at 2601.979 kb on + strand, within Pf6N2E2_2194 at 2601.979 kb on + strand, within Pf6N2E2_2194 at 2601.979 kb on + strand, within Pf6N2E2_2194 at 2601.980 kb on - strand, within Pf6N2E2_2194 at 2602.089 kb on + strand at 2602.090 kb on - strand at 2602.090 kb on - strand at 2602.213 kb on + strand at 2602.213 kb on + strand at 2602.214 kb on - strand at 2602.270 kb on + strand at 2602.270 kb on + strand at 2602.357 kb on + strand at 2602.357 kb on + strand at 2602.358 kb on - strand at 2602.397 kb on - strand, within Pf6N2E2_2195 at 2602.627 kb on + strand, within Pf6N2E2_2195 at 2602.628 kb on - strand, within Pf6N2E2_2195 at 2602.703 kb on - strand, within Pf6N2E2_2195 at 2602.936 kb on - strand at 2602.943 kb on + strand at 2602.944 kb on - strand at 2602.944 kb on - strand at 2602.961 kb on + strand at 2602.962 kb on - strand at 2602.962 kb on - strand at 2603.086 kb on + strand at 2603.086 kb on + strand at 2603.087 kb on - strand at 2603.175 kb on - strand, within Pf6N2E2_2196 at 2603.175 kb on - strand, within Pf6N2E2_2196 at 2603.175 kb on - strand, within Pf6N2E2_2196 at 2603.177 kb on + strand, within Pf6N2E2_2196 at 2603.177 kb on + strand, within Pf6N2E2_2196 at 2603.177 kb on + strand, within Pf6N2E2_2196 at 2603.178 kb on - strand, within Pf6N2E2_2196 at 2603.178 kb on - strand, within Pf6N2E2_2196
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium chloride hemipentahydrate 0.000015625 M remove 2,599,339 + -0.2 2,599,340 - -0.6 2,599,340 - -0.6 2,599,360 + +0.2 2,599,361 - +0.1 2,599,361 - -0.1 2,599,361 - -1.3 2,599,363 + -0.9 2,599,363 + +0.6 2,599,363 + +0.3 2,599,363 + -0.6 2,599,364 - -0.1 2,599,364 - +1.1 2,599,493 - -0.7 2,599,513 + -1.9 2,599,745 + Pf6N2E2_2193 0.29 -0.4 2,599,790 + Pf6N2E2_2193 0.34 -1.1 2,599,790 + Pf6N2E2_2193 0.34 -0.0 2,599,790 + Pf6N2E2_2193 0.34 -0.7 2,599,790 + Pf6N2E2_2193 0.34 -0.8 2,599,790 + Pf6N2E2_2193 0.34 -1.6 2,599,791 - Pf6N2E2_2193 0.35 -0.7 2,599,791 - Pf6N2E2_2193 0.35 +0.3 2,599,791 - Pf6N2E2_2193 0.35 -0.3 2,599,791 - Pf6N2E2_2193 0.35 -0.6 2,599,791 - Pf6N2E2_2193 0.35 -1.0 2,599,864 + Pf6N2E2_2193 0.43 -1.9 2,599,997 + Pf6N2E2_2193 0.60 -0.4 2,599,998 - Pf6N2E2_2193 0.60 -0.3 2,600,201 + Pf6N2E2_2193 0.85 -0.8 2,600,512 + -0.6 2,600,512 + +0.5 2,600,513 - +0.1 2,600,513 - +0.6 2,600,513 - -0.8 2,600,972 + Pf6N2E2_2194 0.33 -0.4 2,600,973 - Pf6N2E2_2194 0.33 +0.1 2,600,973 - Pf6N2E2_2194 0.33 -2.0 2,601,136 + Pf6N2E2_2194 0.42 -0.4 2,601,137 - Pf6N2E2_2194 0.42 -1.2 2,601,352 + Pf6N2E2_2194 0.53 -1.2 2,601,353 - Pf6N2E2_2194 0.53 +0.6 2,601,353 - Pf6N2E2_2194 0.53 -0.3 2,601,406 + Pf6N2E2_2194 0.56 -0.7 2,601,481 + Pf6N2E2_2194 0.59 -1.1 2,601,482 - Pf6N2E2_2194 0.59 -1.2 2,601,552 + Pf6N2E2_2194 0.63 -1.1 2,601,552 + Pf6N2E2_2194 0.63 -0.2 2,601,552 + Pf6N2E2_2194 0.63 -0.9 2,601,552 + Pf6N2E2_2194 0.63 -0.2 2,601,553 - Pf6N2E2_2194 0.63 -0.9 2,601,553 - Pf6N2E2_2194 0.63 +0.3 2,601,553 - Pf6N2E2_2194 0.63 +0.4 2,601,611 + Pf6N2E2_2194 0.66 -0.4 2,601,761 + Pf6N2E2_2194 0.74 -0.5 2,601,761 + Pf6N2E2_2194 0.74 -1.7 2,601,761 + Pf6N2E2_2194 0.74 -0.7 2,601,762 - Pf6N2E2_2194 0.74 +0.1 2,601,762 - Pf6N2E2_2194 0.74 -0.7 2,601,762 - Pf6N2E2_2194 0.74 -0.0 2,601,979 + Pf6N2E2_2194 0.85 -2.7 2,601,979 + Pf6N2E2_2194 0.85 -1.0 2,601,979 + Pf6N2E2_2194 0.85 -1.1 2,601,980 - Pf6N2E2_2194 0.85 -0.4 2,602,089 + -0.2 2,602,090 - -0.7 2,602,090 - +1.2 2,602,213 + -0.3 2,602,213 + -0.7 2,602,214 - -0.7 2,602,270 + +0.3 2,602,270 + -0.4 2,602,357 + +1.0 2,602,357 + +1.0 2,602,358 - +0.7 2,602,397 - Pf6N2E2_2195 0.14 +1.5 2,602,627 + Pf6N2E2_2195 0.49 +2.1 2,602,628 - Pf6N2E2_2195 0.50 +0.6 2,602,703 - Pf6N2E2_2195 0.61 +0.8 2,602,936 - -0.4 2,602,943 + +0.8 2,602,944 - +0.1 2,602,944 - -0.6 2,602,961 + +0.8 2,602,962 - -0.7 2,602,962 - -0.3 2,603,086 + +0.4 2,603,086 + +0.7 2,603,087 - +0.2 2,603,175 - Pf6N2E2_2196 0.27 +0.0 2,603,175 - Pf6N2E2_2196 0.27 -0.1 2,603,175 - Pf6N2E2_2196 0.27 +0.6 2,603,177 + Pf6N2E2_2196 0.28 -1.0 2,603,177 + Pf6N2E2_2196 0.28 +0.1 2,603,177 + Pf6N2E2_2196 0.28 -0.4 2,603,178 - Pf6N2E2_2196 0.28 -0.2 2,603,178 - Pf6N2E2_2196 0.28 -0.2
Or see this region's nucleotide sequence