Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_381

Experiment: chromate 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_380 and Pf6N2E2_381 are separated by 40 nucleotidesPf6N2E2_381 and Pf6N2E2_382 are separated by 249 nucleotides Pf6N2E2_380 - putative ABC transporter, periplasmic substrate-binding protein, at 446,764 to 447,513 _380 Pf6N2E2_381 - hypothetical protein, at 447,554 to 448,942 _381 Pf6N2E2_382 - RNA:NAD 2'-phosphotransferase, at 449,192 to 449,776 _382 Position (kb) 447 448 449Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 446.694 kb on + strandat 446.694 kb on + strandat 446.695 kb on - strandat 446.700 kb on + strandat 446.801 kb on + strandat 446.802 kb on - strandat 446.837 kb on - strandat 446.866 kb on + strand, within Pf6N2E2_380at 446.867 kb on - strand, within Pf6N2E2_380at 446.867 kb on - strand, within Pf6N2E2_380at 446.873 kb on - strand, within Pf6N2E2_380at 446.873 kb on - strand, within Pf6N2E2_380at 446.970 kb on + strand, within Pf6N2E2_380at 447.016 kb on + strand, within Pf6N2E2_380at 447.016 kb on + strand, within Pf6N2E2_380at 447.016 kb on + strand, within Pf6N2E2_380at 447.017 kb on - strand, within Pf6N2E2_380at 447.052 kb on + strand, within Pf6N2E2_380at 447.052 kb on + strand, within Pf6N2E2_380at 447.052 kb on + strand, within Pf6N2E2_380at 447.053 kb on - strand, within Pf6N2E2_380at 447.311 kb on - strand, within Pf6N2E2_380at 447.314 kb on - strand, within Pf6N2E2_380at 447.314 kb on - strand, within Pf6N2E2_380at 447.371 kb on - strand, within Pf6N2E2_380at 447.371 kb on - strand, within Pf6N2E2_380at 447.371 kb on - strand, within Pf6N2E2_380at 447.385 kb on + strand, within Pf6N2E2_380at 447.385 kb on + strand, within Pf6N2E2_380at 447.386 kb on - strand, within Pf6N2E2_380at 447.386 kb on - strand, within Pf6N2E2_380at 447.619 kb on - strandat 447.619 kb on - strandat 447.619 kb on - strandat 447.619 kb on - strandat 447.619 kb on - strandat 447.630 kb on + strandat 447.642 kb on + strandat 447.642 kb on + strandat 447.642 kb on + strandat 447.642 kb on + strandat 447.643 kb on - strandat 447.643 kb on - strandat 447.643 kb on - strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.645 kb on + strandat 447.646 kb on - strandat 447.646 kb on - strandat 447.646 kb on - strandat 447.646 kb on - strandat 447.646 kb on - strandat 447.648 kb on + strandat 447.649 kb on - strandat 447.859 kb on + strand, within Pf6N2E2_381at 447.859 kb on + strand, within Pf6N2E2_381at 447.859 kb on + strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 447.860 kb on - strand, within Pf6N2E2_381at 448.039 kb on - strand, within Pf6N2E2_381at 448.039 kb on - strand, within Pf6N2E2_381at 448.039 kb on - strand, within Pf6N2E2_381at 448.039 kb on - strand, within Pf6N2E2_381at 448.045 kb on + strand, within Pf6N2E2_381at 448.096 kb on + strand, within Pf6N2E2_381at 448.096 kb on + strand, within Pf6N2E2_381at 448.097 kb on - strand, within Pf6N2E2_381at 448.098 kb on + strand, within Pf6N2E2_381at 448.098 kb on + strand, within Pf6N2E2_381at 448.098 kb on + strand, within Pf6N2E2_381at 448.098 kb on + strand, within Pf6N2E2_381at 448.099 kb on - strand, within Pf6N2E2_381at 448.099 kb on - strand, within Pf6N2E2_381at 448.201 kb on + strand, within Pf6N2E2_381at 448.201 kb on + strand, within Pf6N2E2_381at 448.202 kb on - strand, within Pf6N2E2_381at 448.356 kb on + strand, within Pf6N2E2_381at 448.356 kb on + strand, within Pf6N2E2_381at 448.357 kb on - strand, within Pf6N2E2_381at 448.357 kb on - strand, within Pf6N2E2_381at 448.360 kb on - strand, within Pf6N2E2_381at 448.404 kb on + strand, within Pf6N2E2_381at 448.404 kb on + strand, within Pf6N2E2_381at 448.404 kb on + strand, within Pf6N2E2_381at 448.405 kb on - strand, within Pf6N2E2_381at 448.470 kb on + strand, within Pf6N2E2_381at 448.588 kb on + strand, within Pf6N2E2_381at 448.589 kb on - strand, within Pf6N2E2_381at 448.683 kb on + strand, within Pf6N2E2_381at 448.708 kb on - strand, within Pf6N2E2_381at 448.708 kb on - strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.769 kb on + strand, within Pf6N2E2_381at 448.770 kb on - strand, within Pf6N2E2_381at 448.770 kb on - strand, within Pf6N2E2_381at 448.956 kb on - strandat 449.004 kb on + strandat 449.004 kb on + strandat 449.009 kb on + strandat 449.009 kb on + strandat 449.176 kb on + strandat 449.177 kb on - strandat 449.177 kb on - strandat 449.177 kb on - strandat 449.177 kb on - strandat 449.177 kb on - strandat 449.178 kb on + strandat 449.197 kb on + strandat 449.197 kb on + strandat 449.198 kb on - strandat 449.206 kb on + strandat 449.206 kb on + strandat 449.207 kb on - strandat 449.214 kb on - strandat 449.226 kb on + strandat 449.226 kb on + strandat 449.227 kb on - strandat 449.227 kb on - strandat 449.306 kb on + strand, within Pf6N2E2_382at 449.307 kb on - strand, within Pf6N2E2_382at 449.307 kb on - strand, within Pf6N2E2_382at 449.337 kb on + strand, within Pf6N2E2_382at 449.457 kb on + strand, within Pf6N2E2_382at 449.457 kb on + strand, within Pf6N2E2_382at 449.457 kb on + strand, within Pf6N2E2_382at 449.457 kb on + strand, within Pf6N2E2_382at 449.458 kb on - strand, within Pf6N2E2_382at 449.458 kb on - strand, within Pf6N2E2_382at 449.458 kb on - strand, within Pf6N2E2_382at 449.458 kb on - strand, within Pf6N2E2_382at 449.604 kb on + strand, within Pf6N2E2_382at 449.614 kb on + strand, within Pf6N2E2_382at 449.615 kb on - strand, within Pf6N2E2_382at 449.647 kb on + strand, within Pf6N2E2_382at 449.648 kb on - strand, within Pf6N2E2_382at 449.682 kb on - strand, within Pf6N2E2_382at 449.682 kb on - strand, within Pf6N2E2_382at 449.708 kb on + strand, within Pf6N2E2_382at 449.709 kb on - strand, within Pf6N2E2_382at 449.711 kb on + strand, within Pf6N2E2_382at 449.711 kb on + strandat 449.711 kb on + strand, within Pf6N2E2_382at 449.711 kb on + strand, within Pf6N2E2_382at 449.711 kb on + strand, within Pf6N2E2_382at 449.712 kb on - strand, within Pf6N2E2_382at 449.712 kb on - strand, within Pf6N2E2_382at 449.715 kb on + strand, within Pf6N2E2_382at 449.715 kb on + strand, within Pf6N2E2_382at 449.715 kb on + strand, within Pf6N2E2_382at 449.716 kb on - strand, within Pf6N2E2_382at 449.791 kb on + strandat 449.791 kb on + strandat 449.792 kb on - strandat 449.792 kb on - strandat 449.792 kb on - strandat 449.794 kb on + strandat 449.794 kb on + strandat 449.795 kb on - strandat 449.795 kb on - strandat 449.795 kb on - strandat 449.809 kb on + strandat 449.809 kb on + strandat 449.810 kb on - strandat 449.810 kb on - strandat 449.810 kb on - strandat 449.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction chromate 0.0000015625 M
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446,694 + -0.5
446,694 + -0.2
446,695 - +1.4
446,700 + +1.5
446,801 + +0.1
446,802 - -0.6
446,837 - +1.0
446,866 + Pf6N2E2_380 0.14 +0.1
446,867 - Pf6N2E2_380 0.14 +1.5
446,867 - Pf6N2E2_380 0.14 +0.6
446,873 - Pf6N2E2_380 0.15 -0.3
446,873 - Pf6N2E2_380 0.15 -0.7
446,970 + Pf6N2E2_380 0.27 -0.9
447,016 + Pf6N2E2_380 0.34 -0.4
447,016 + Pf6N2E2_380 0.34 +0.2
447,016 + Pf6N2E2_380 0.34 +1.7
447,017 - Pf6N2E2_380 0.34 +0.2
447,052 + Pf6N2E2_380 0.38 +0.4
447,052 + Pf6N2E2_380 0.38 +1.7
447,052 + Pf6N2E2_380 0.38 -0.5
447,053 - Pf6N2E2_380 0.39 -0.9
447,311 - Pf6N2E2_380 0.73 -0.5
447,314 - Pf6N2E2_380 0.73 -0.1
447,314 - Pf6N2E2_380 0.73 -0.3
447,371 - Pf6N2E2_380 0.81 -0.6
447,371 - Pf6N2E2_380 0.81 -0.3
447,371 - Pf6N2E2_380 0.81 +0.2
447,385 + Pf6N2E2_380 0.83 -0.4
447,385 + Pf6N2E2_380 0.83 -0.2
447,386 - Pf6N2E2_380 0.83 +0.7
447,386 - Pf6N2E2_380 0.83 +0.5
447,619 - +0.0
447,619 - -0.1
447,619 - +0.2
447,619 - -0.5
447,619 - -0.4
447,630 + +0.6
447,642 + +0.2
447,642 + +1.0
447,642 + +0.9
447,642 + +0.6
447,643 - +0.3
447,643 - -0.1
447,643 - +0.2
447,645 + -0.5
447,645 + -0.8
447,645 + -0.1
447,645 + +1.5
447,645 + +0.4
447,645 + +0.0
447,646 - +0.2
447,646 - +0.2
447,646 - -0.5
447,646 - +0.5
447,646 - +0.1
447,648 + -0.5
447,649 - -0.5
447,859 + Pf6N2E2_381 0.22 -1.4
447,859 + Pf6N2E2_381 0.22 +0.6
447,859 + Pf6N2E2_381 0.22 +1.2
447,860 - Pf6N2E2_381 0.22 +0.8
447,860 - Pf6N2E2_381 0.22 -0.8
447,860 - Pf6N2E2_381 0.22 +0.0
447,860 - Pf6N2E2_381 0.22 +0.4
447,860 - Pf6N2E2_381 0.22 +0.8
448,039 - Pf6N2E2_381 0.35 +0.9
448,039 - Pf6N2E2_381 0.35 -0.2
448,039 - Pf6N2E2_381 0.35 -3.2
448,039 - Pf6N2E2_381 0.35 +0.5
448,045 + Pf6N2E2_381 0.35 +1.0
448,096 + Pf6N2E2_381 0.39 +0.5
448,096 + Pf6N2E2_381 0.39 -0.0
448,097 - Pf6N2E2_381 0.39 +0.2
448,098 + Pf6N2E2_381 0.39 -0.7
448,098 + Pf6N2E2_381 0.39 +0.5
448,098 + Pf6N2E2_381 0.39 +0.5
448,098 + Pf6N2E2_381 0.39 +0.3
448,099 - Pf6N2E2_381 0.39 -0.1
448,099 - Pf6N2E2_381 0.39 +0.8
448,201 + Pf6N2E2_381 0.47 +0.4
448,201 + Pf6N2E2_381 0.47 +1.2
448,202 - Pf6N2E2_381 0.47 -2.2
448,356 + Pf6N2E2_381 0.58 +0.7
448,356 + Pf6N2E2_381 0.58 +1.1
448,357 - Pf6N2E2_381 0.58 +2.8
448,357 - Pf6N2E2_381 0.58 +0.2
448,360 - Pf6N2E2_381 0.58 +0.6
448,404 + Pf6N2E2_381 0.61 +0.8
448,404 + Pf6N2E2_381 0.61 -0.4
448,404 + Pf6N2E2_381 0.61 +0.6
448,405 - Pf6N2E2_381 0.61 -0.0
448,470 + Pf6N2E2_381 0.66 +0.9
448,588 + Pf6N2E2_381 0.74 +1.1
448,589 - Pf6N2E2_381 0.75 -0.1
448,683 + Pf6N2E2_381 0.81 +0.2
448,708 - Pf6N2E2_381 0.83 -0.2
448,708 - Pf6N2E2_381 0.83 -0.1
448,769 + Pf6N2E2_381 0.87 +0.3
448,769 + Pf6N2E2_381 0.87 +0.4
448,769 + Pf6N2E2_381 0.87 +0.9
448,769 + Pf6N2E2_381 0.87 +0.5
448,769 + Pf6N2E2_381 0.87 +0.9
448,770 - Pf6N2E2_381 0.88 +0.5
448,770 - Pf6N2E2_381 0.88 +1.2
448,956 - +0.5
449,004 + +0.7
449,004 + +0.8
449,009 + -0.1
449,009 + -1.4
449,176 + +0.6
449,177 - -0.0
449,177 - +0.8
449,177 - +0.2
449,177 - +0.2
449,177 - +1.5
449,178 + +0.1
449,197 + +1.1
449,197 + +0.3
449,198 - +0.0
449,206 + -0.8
449,206 + -1.6
449,207 - +0.4
449,214 - +0.6
449,226 + +0.4
449,226 + -0.1
449,227 - -0.5
449,227 - -2.3
449,306 + Pf6N2E2_382 0.19 +0.8
449,307 - Pf6N2E2_382 0.20 +0.5
449,307 - Pf6N2E2_382 0.20 -0.8
449,337 + Pf6N2E2_382 0.25 +1.2
449,457 + Pf6N2E2_382 0.45 +0.6
449,457 + Pf6N2E2_382 0.45 +1.0
449,457 + Pf6N2E2_382 0.45 +0.0
449,457 + Pf6N2E2_382 0.45 -0.2
449,458 - Pf6N2E2_382 0.45 -0.1
449,458 - Pf6N2E2_382 0.45 +0.3
449,458 - Pf6N2E2_382 0.45 -0.6
449,458 - Pf6N2E2_382 0.45 +1.1
449,604 + Pf6N2E2_382 0.70 -0.5
449,614 + Pf6N2E2_382 0.72 -0.1
449,615 - Pf6N2E2_382 0.72 +1.5
449,647 + Pf6N2E2_382 0.78 -0.8
449,648 - Pf6N2E2_382 0.78 -1.6
449,682 - Pf6N2E2_382 0.84 -0.6
449,682 - Pf6N2E2_382 0.84 +0.7
449,708 + Pf6N2E2_382 0.88 -0.7
449,709 - Pf6N2E2_382 0.88 -0.5
449,711 + Pf6N2E2_382 0.89 +0.8
449,711 + +0.6
449,711 + Pf6N2E2_382 0.89 +0.0
449,711 + Pf6N2E2_382 0.89 +0.0
449,711 + Pf6N2E2_382 0.89 +0.0
449,712 - Pf6N2E2_382 0.89 +0.5
449,712 - Pf6N2E2_382 0.89 -0.1
449,715 + Pf6N2E2_382 0.89 +0.5
449,715 + Pf6N2E2_382 0.89 +0.5
449,715 + Pf6N2E2_382 0.89 -1.4
449,716 - Pf6N2E2_382 0.90 +0.6
449,791 + +0.1
449,791 + +0.6
449,792 - +0.2
449,792 - -0.7
449,792 - +0.6
449,794 + -0.4
449,794 + +2.2
449,795 - -0.4
449,795 - +0.1
449,795 - -0.3
449,809 + +1.8
449,809 + -0.4
449,810 - +0.8
449,810 - +0.7
449,810 - +0.2
449,879 + +0.2

Or see this region's nucleotide sequence