Experiment: ShewMM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0867 and SO0868 are separated by 57 nucleotides SO0868 and panC are separated by 296 nucleotides panC and panB are separated by 76 nucleotides panB and folK-1 are separated by 56 nucleotides
SO0867: SO0867 - serine protease, subtilase family (NCBI ptt file), at 895,915 to 898,371
SO0867
SO0868: SO0868 - hypothetical protein (NCBI ptt file), at 898,429 to 898,950
SO0868
SO0869: panC - pantoate--beta-alanine ligase (NCBI ptt file), at 899,247 to 900,092
panC
SO0870: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file), at 900,169 to 900,963
panB
SO0871: folK-1 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (NCBI ptt file), at 901,020 to 901,508
folK-1
Position (kb) 899
900
901 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 898.298 kb on + strand at 898.298 kb on + strand at 898.298 kb on + strand at 898.306 kb on - strand at 898.310 kb on + strand at 898.310 kb on + strand at 898.328 kb on - strand at 898.365 kb on + strand at 898.365 kb on + strand at 898.365 kb on + strand at 898.365 kb on + strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.497 kb on - strand, within SO0868 at 898.635 kb on + strand, within SO0868 at 898.642 kb on - strand, within SO0868 at 898.680 kb on + strand, within SO0868 at 898.681 kb on - strand, within SO0868 at 898.688 kb on - strand, within SO0868 at 898.897 kb on - strand, within SO0868 at 898.907 kb on - strand at 898.917 kb on - strand at 898.987 kb on - strand at 899.164 kb on + strand at 899.198 kb on - strand at 899.198 kb on - strand at 899.198 kb on - strand at 900.166 kb on - strand at 900.357 kb on - strand, within panB at 900.551 kb on - strand, within panB at 900.740 kb on - strand, within panB at 900.800 kb on - strand, within panB at 900.947 kb on - strand at 900.962 kb on - strand at 901.040 kb on - strand at 901.074 kb on + strand, within folK-1
Per-strain Table
Position Strand Gene LocusTag Fraction ShewMM remove 898,298 + +0.1 898,298 + -0.1 898,298 + -0.4 898,306 - -0.2 898,310 + +0.2 898,310 + -0.2 898,328 - +0.3 898,365 + -0.9 898,365 + -0.5 898,365 + +0.4 898,365 + -0.5 898,373 - -0.4 898,373 - -0.4 898,373 - -0.0 898,373 - -1.3 898,373 - -0.3 898,373 - +0.1 898,373 - -2.6 898,373 - +0.1 898,497 - SO0868 0.13 -0.1 898,635 + SO0868 0.39 +0.2 898,642 - SO0868 0.41 +1.1 898,680 + SO0868 0.48 -0.2 898,681 - SO0868 0.48 -1.0 898,688 - SO0868 0.50 +0.0 898,897 - SO0868 0.90 -0.3 898,907 - -0.1 898,917 - +1.5 898,987 - +0.3 899,164 + -0.7 899,198 - -0.1 899,198 - -0.2 899,198 - +0.9 900,166 - +0.3 900,357 - panB SO0870 0.24 -3.4 900,551 - panB SO0870 0.48 -5.2 900,740 - panB SO0870 0.72 -2.8 900,800 - panB SO0870 0.79 -3.8 900,947 - -2.0 900,962 - -3.2 901,040 - -4.1 901,074 + folK-1 SO0871 0.11 -3.4
Or see this region's nucleotide sequence