Strain Fitness in Shewanella oneidensis MR-1 around SO0868

Experiment: ShewMM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0867 and SO0868 are separated by 57 nucleotidesSO0868 and panC are separated by 296 nucleotides SO0867: SO0867 - serine protease, subtilase family (NCBI ptt file), at 895,915 to 898,371 SO0867 SO0868: SO0868 - hypothetical protein (NCBI ptt file), at 898,429 to 898,950 SO0868 SO0869: panC - pantoate--beta-alanine ligase (NCBI ptt file), at 899,247 to 900,092 panC Position (kb) 898 899Strain fitness (log2 ratio) -2 -1 0 1at 897.445 kb on - strand, within SO0867at 897.445 kb on - strand, within SO0867at 897.445 kb on - strand, within SO0867at 897.445 kb on - strand, within SO0867at 897.474 kb on + strand, within SO0867at 897.474 kb on + strand, within SO0867at 897.482 kb on - strand, within SO0867at 897.526 kb on - strand, within SO0867at 897.645 kb on + strand, within SO0867at 897.645 kb on + strand, within SO0867at 897.645 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.670 kb on + strand, within SO0867at 897.688 kb on - strand, within SO0867at 897.710 kb on + strand, within SO0867at 897.725 kb on + strand, within SO0867at 897.792 kb on + strand, within SO0867at 897.817 kb on + strand, within SO0867at 897.881 kb on - strand, within SO0867at 897.920 kb on + strand, within SO0867at 897.927 kb on - strand, within SO0867at 897.931 kb on + strand, within SO0867at 897.931 kb on + strand, within SO0867at 897.942 kb on + strand, within SO0867at 897.981 kb on - strand, within SO0867at 898.024 kb on + strand, within SO0867at 898.030 kb on + strand, within SO0867at 898.030 kb on + strand, within SO0867at 898.030 kb on + strand, within SO0867at 898.038 kb on - strand, within SO0867at 898.038 kb on - strand, within SO0867at 898.055 kb on - strand, within SO0867at 898.059 kb on + strand, within SO0867at 898.059 kb on + strand, within SO0867at 898.067 kb on - strand, within SO0867at 898.067 kb on - strand, within SO0867at 898.089 kb on + strand, within SO0867at 898.097 kb on - strand, within SO0867at 898.097 kb on - strand, within SO0867at 898.109 kb on + strand, within SO0867at 898.159 kb on + strandat 898.197 kb on + strandat 898.202 kb on + strandat 898.205 kb on - strandat 898.205 kb on - strandat 898.298 kb on + strandat 898.298 kb on + strandat 898.298 kb on + strandat 898.306 kb on - strandat 898.310 kb on + strandat 898.310 kb on + strandat 898.328 kb on - strandat 898.365 kb on + strandat 898.365 kb on + strandat 898.365 kb on + strandat 898.365 kb on + strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.373 kb on - strandat 898.497 kb on - strand, within SO0868at 898.635 kb on + strand, within SO0868at 898.642 kb on - strand, within SO0868at 898.680 kb on + strand, within SO0868at 898.681 kb on - strand, within SO0868at 898.688 kb on - strand, within SO0868at 898.897 kb on - strand, within SO0868at 898.907 kb on - strandat 898.917 kb on - strandat 898.987 kb on - strandat 899.164 kb on + strandat 899.198 kb on - strandat 899.198 kb on - strandat 899.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ShewMM
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897,445 - SO0867 0.62 +0.6
897,445 - SO0867 0.62 -0.2
897,445 - SO0867 0.62 +0.4
897,445 - SO0867 0.62 +0.1
897,474 + SO0867 0.63 +0.7
897,474 + SO0867 0.63 +0.3
897,482 - SO0867 0.64 +0.1
897,526 - SO0867 0.66 +0.1
897,645 + SO0867 0.70 -0.7
897,645 + SO0867 0.70 +0.9
897,645 + SO0867 0.70 -0.7
897,670 + SO0867 0.71 -0.2
897,670 + SO0867 0.71 -0.4
897,670 + SO0867 0.71 +0.7
897,670 + SO0867 0.71 +0.2
897,670 + SO0867 0.71 +0.1
897,688 - SO0867 0.72 +0.0
897,710 + SO0867 0.73 +0.2
897,725 + SO0867 0.74 +0.5
897,792 + SO0867 0.76 +0.2
897,817 + SO0867 0.77 +0.6
897,881 - SO0867 0.80 -1.1
897,920 + SO0867 0.82 -0.5
897,927 - SO0867 0.82 -0.1
897,931 + SO0867 0.82 +0.8
897,931 + SO0867 0.82 +0.1
897,942 + SO0867 0.82 -0.9
897,981 - SO0867 0.84 +0.5
898,024 + SO0867 0.86 -0.9
898,030 + SO0867 0.86 +0.1
898,030 + SO0867 0.86 +0.5
898,030 + SO0867 0.86 -0.1
898,038 - SO0867 0.86 +0.1
898,038 - SO0867 0.86 -0.8
898,055 - SO0867 0.87 +0.8
898,059 + SO0867 0.87 -0.4
898,059 + SO0867 0.87 +0.1
898,067 - SO0867 0.88 +0.2
898,067 - SO0867 0.88 -0.6
898,089 + SO0867 0.88 -0.1
898,097 - SO0867 0.89 +0.1
898,097 - SO0867 0.89 +0.7
898,109 + SO0867 0.89 +0.3
898,159 + +0.3
898,197 + +0.2
898,202 + -0.0
898,205 - -1.3
898,205 - +0.1
898,298 + +0.1
898,298 + -0.1
898,298 + -0.4
898,306 - -0.2
898,310 + +0.2
898,310 + -0.2
898,328 - +0.3
898,365 + -0.9
898,365 + -0.5
898,365 + +0.4
898,365 + -0.5
898,373 - -0.4
898,373 - -0.4
898,373 - -0.0
898,373 - -1.3
898,373 - -0.3
898,373 - +0.1
898,373 - -2.6
898,373 - +0.1
898,497 - SO0868 0.13 -0.1
898,635 + SO0868 0.39 +0.2
898,642 - SO0868 0.41 +1.1
898,680 + SO0868 0.48 -0.2
898,681 - SO0868 0.48 -1.0
898,688 - SO0868 0.50 +0.0
898,897 - SO0868 0.90 -0.3
898,907 - -0.1
898,917 - +1.5
898,987 - +0.3
899,164 + -0.7
899,198 - -0.1
899,198 - -0.2
899,198 - +0.9

Or see this region's nucleotide sequence