Strain Fitness in Shewanella oneidensis MR-1 around SO0281

Experiment: ShewMM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmrcA and SO0281 are separated by 189 nucleotidesSO0281 and SO0282 overlap by 13 nucleotidesSO0282 and SO0283 overlap by 4 nucleotides SO0280: mrcA - penicillin-binding protein 1A (NCBI ptt file), at 286,053 to 288,572 mrcA SO0281: SO0281 - type IV pilus biogenesis protein PilM (NCBI ptt file), at 288,762 to 289,841 SO0281 SO0282: SO0282 - type IV pilus biogenesis protein PilN (NCBI ptt file), at 289,829 to 290,413 SO0282 SO0283: SO0283 - type IV pilus biogenesis protein PilO (NCBI ptt file), at 290,410 to 291,030 SO0283 Position (kb) 288 289 290Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 288.616 kb on - strandat 288.631 kb on - strandat 288.631 kb on - strandat 288.650 kb on + strandat 288.722 kb on - strandat 288.805 kb on + strandat 288.845 kb on + strandat 288.845 kb on + strandat 288.845 kb on + strandat 288.952 kb on + strand, within SO0281at 288.960 kb on - strand, within SO0281at 289.042 kb on - strand, within SO0281at 289.103 kb on + strand, within SO0281at 289.190 kb on + strand, within SO0281at 289.190 kb on + strand, within SO0281at 289.193 kb on - strand, within SO0281at 289.193 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.203 kb on - strand, within SO0281at 289.223 kb on - strand, within SO0281at 289.272 kb on + strand, within SO0281at 289.279 kb on + strand, within SO0281at 289.280 kb on - strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.311 kb on - strand, within SO0281at 289.332 kb on + strand, within SO0281at 289.338 kb on - strand, within SO0281at 289.392 kb on + strand, within SO0281at 289.410 kb on + strand, within SO0281at 289.410 kb on + strand, within SO0281at 289.422 kb on + strand, within SO0281at 289.428 kb on + strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.454 kb on + strand, within SO0281at 289.550 kb on - strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.662 kb on + strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.669 kb on - strand, within SO0281at 289.669 kb on - strand, within SO0281at 289.701 kb on + strand, within SO0281at 289.701 kb on + strand, within SO0281at 289.708 kb on + strand, within SO0281at 289.708 kb on + strand, within SO0281at 289.731 kb on + strand, within SO0281at 289.733 kb on + strand, within SO0281at 289.733 kb on - strand, within SO0281at 289.749 kb on - strandat 289.787 kb on + strandat 289.791 kb on - strandat 289.797 kb on + strandat 289.804 kb on + strandat 289.805 kb on - strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.812 kb on - strandat 289.812 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.832 kb on - strandat 289.836 kb on + strandat 289.836 kb on + strandat 289.837 kb on + strandat 289.864 kb on + strandat 289.884 kb on - strandat 289.928 kb on - strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.941 kb on - strand, within SO0282at 289.946 kb on - strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 290.002 kb on + strand, within SO0282at 290.002 kb on + strand, within SO0282at 290.135 kb on + strand, within SO0282at 290.156 kb on - strand, within SO0282at 290.163 kb on + strand, within SO0282at 290.167 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.218 kb on + strand, within SO0282at 290.218 kb on + strand, within SO0282at 290.238 kb on + strand, within SO0282at 290.238 kb on - strand, within SO0282at 290.250 kb on + strand, within SO0282at 290.256 kb on + strand, within SO0282at 290.258 kb on + strand, within SO0282at 290.258 kb on - strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on - strand, within SO0282at 290.266 kb on - strand, within SO0282at 290.266 kb on - strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.273 kb on - strand, within SO0282at 290.275 kb on - strand, within SO0282at 290.282 kb on + strand, within SO0282at 290.282 kb on - strand, within SO0282at 290.291 kb on + strand, within SO0282at 290.303 kb on - strand, within SO0282at 290.318 kb on + strand, within SO0282at 290.327 kb on - strand, within SO0282at 290.327 kb on - strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.355 kb on + strandat 290.378 kb on - strandat 290.378 kb on - strandat 290.420 kb on + strandat 290.428 kb on - strandat 290.428 kb on - strandat 290.428 kb on - strandat 290.474 kb on - strand, within SO0283at 290.533 kb on + strand, within SO0283at 290.536 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.577 kb on - strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.584 kb on - strand, within SO0283at 290.597 kb on - strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.637 kb on + strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.639 kb on - strand, within SO0283at 290.642 kb on + strand, within SO0283at 290.650 kb on + strand, within SO0283at 290.731 kb on + strand, within SO0283at 290.733 kb on - strand, within SO0283at 290.760 kb on - strand, within SO0283at 290.766 kb on + strand, within SO0283at 290.766 kb on - strand, within SO0283at 290.825 kb on - strand, within SO0283

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ShewMM
remove
288,616 - -1.6
288,631 - -0.1
288,631 - +0.1
288,650 + -0.1
288,722 - -0.1
288,805 + -0.9
288,845 + +0.8
288,845 + -0.2
288,845 + -1.4
288,952 + SO0281 0.18 -0.3
288,960 - SO0281 0.18 +0.2
289,042 - SO0281 0.26 +2.0
289,103 + SO0281 0.32 +0.3
289,190 + SO0281 0.40 -0.7
289,190 + SO0281 0.40 +0.9
289,193 - SO0281 0.40 +0.6
289,193 - SO0281 0.40 -1.1
289,198 - SO0281 0.40 +0.9
289,198 - SO0281 0.40 +0.5
289,198 - SO0281 0.40 +0.3
289,198 - SO0281 0.40 -0.2
289,198 - SO0281 0.40 +0.1
289,203 - SO0281 0.41 +0.4
289,223 - SO0281 0.43 +0.5
289,272 + SO0281 0.47 +0.2
289,279 + SO0281 0.48 -0.0
289,280 - SO0281 0.48 +0.1
289,284 + SO0281 0.48 -0.0
289,284 + SO0281 0.48 +0.5
289,284 + SO0281 0.48 -0.4
289,311 - SO0281 0.51 +0.2
289,332 + SO0281 0.53 -0.1
289,338 - SO0281 0.53 -0.1
289,392 + SO0281 0.58 +0.0
289,410 + SO0281 0.60 -2.4
289,410 + SO0281 0.60 -0.0
289,422 + SO0281 0.61 -0.3
289,428 + SO0281 0.62 +1.1
289,436 - SO0281 0.62 +0.0
289,436 - SO0281 0.62 +0.2
289,436 - SO0281 0.62 +1.0
289,454 + SO0281 0.64 +0.1
289,550 - SO0281 0.73 +0.1
289,654 + SO0281 0.83 +1.5
289,654 + SO0281 0.83 +0.1
289,654 + SO0281 0.83 +0.4
289,654 + SO0281 0.83 +0.4
289,662 + SO0281 0.83 -0.2
289,662 - SO0281 0.83 -0.4
289,662 - SO0281 0.83 +0.0
289,662 - SO0281 0.83 +0.6
289,662 - SO0281 0.83 +0.5
289,669 - SO0281 0.84 +0.4
289,669 - SO0281 0.84 -0.3
289,701 + SO0281 0.87 -0.0
289,701 + SO0281 0.87 +0.7
289,708 + SO0281 0.88 +0.8
289,708 + SO0281 0.88 -0.0
289,731 + SO0281 0.90 -1.3
289,733 + SO0281 0.90 +0.7
289,733 - SO0281 0.90 -0.3
289,749 - -0.3
289,787 + -0.2
289,791 - -1.0
289,797 + +0.2
289,804 + +0.5
289,805 - +0.3
289,809 + +0.2
289,809 + -0.9
289,809 + +0.3
289,809 + +0.0
289,812 - -0.4
289,812 - -0.2
289,817 - +1.2
289,817 - +0.3
289,817 - -0.9
289,817 - -0.1
289,832 - -0.4
289,836 + -5.5
289,836 + +0.2
289,837 + -0.3
289,864 + +0.1
289,884 - +0.5
289,928 - SO0282 0.17 -0.7
289,938 + SO0282 0.19 +1.1
289,938 + SO0282 0.19 +0.1
289,938 + SO0282 0.19 -0.0
289,938 + SO0282 0.19 +0.1
289,941 - SO0282 0.19 +0.0
289,946 - SO0282 0.20 -0.3
289,968 + SO0282 0.24 +0.6
289,968 + SO0282 0.24 -0.5
289,968 + SO0282 0.24 +0.8
289,968 + SO0282 0.24 -0.0
289,976 - SO0282 0.25 -0.8
289,976 - SO0282 0.25 -0.5
289,976 - SO0282 0.25 +0.5
289,976 - SO0282 0.25 -0.7
289,976 - SO0282 0.25 +1.0
289,976 - SO0282 0.25 -0.2
290,002 + SO0282 0.30 +1.2
290,002 + SO0282 0.30 +0.2
290,135 + SO0282 0.52 +0.1
290,156 - SO0282 0.56 -0.2
290,163 + SO0282 0.57 +0.3
290,167 - SO0282 0.58 -0.0
290,171 - SO0282 0.58 +0.2
290,171 - SO0282 0.58 +0.5
290,171 - SO0282 0.58 -0.6
290,171 - SO0282 0.58 +1.6
290,218 + SO0282 0.66 +0.7
290,218 + SO0282 0.66 +0.5
290,238 + SO0282 0.70 +0.8
290,238 - SO0282 0.70 +0.2
290,250 + SO0282 0.72 +0.2
290,256 + SO0282 0.73 -0.1
290,258 + SO0282 0.73 +0.8
290,258 - SO0282 0.73 +1.0
290,265 + SO0282 0.75 +0.8
290,265 + SO0282 0.75 +1.1
290,265 + SO0282 0.75 +0.4
290,265 + SO0282 0.75 -0.5
290,265 + SO0282 0.75 +0.2
290,265 - SO0282 0.75 -0.1
290,266 - SO0282 0.75 -0.1
290,266 - SO0282 0.75 -0.4
290,272 + SO0282 0.76 -0.1
290,272 + SO0282 0.76 +0.0
290,272 + SO0282 0.76 -0.3
290,273 - SO0282 0.76 +0.9
290,275 - SO0282 0.76 +1.9
290,282 + SO0282 0.77 +0.6
290,282 - SO0282 0.77 -0.1
290,291 + SO0282 0.79 +0.5
290,303 - SO0282 0.81 +1.4
290,318 + SO0282 0.84 -0.5
290,327 - SO0282 0.85 +0.6
290,327 - SO0282 0.85 +0.8
290,343 + SO0282 0.88 -0.1
290,343 + SO0282 0.88 -0.5
290,343 + SO0282 0.88 +0.2
290,343 + SO0282 0.88 -0.3
290,343 + SO0282 0.88 +1.6
290,343 + SO0282 0.88 -0.4
290,343 + SO0282 0.88 -0.6
290,343 + SO0282 0.88 +0.6
290,351 - SO0282 0.89 +1.6
290,351 - SO0282 0.89 +0.1
290,351 - SO0282 0.89 +0.1
290,351 - SO0282 0.89 +0.4
290,351 - SO0282 0.89 +0.9
290,351 - SO0282 0.89 +1.5
290,351 - SO0282 0.89 +0.5
290,355 + +0.0
290,378 - +0.5
290,378 - -0.2
290,420 + +0.2
290,428 - +0.6
290,428 - +0.2
290,428 - -0.7
290,474 - SO0283 0.10 +0.7
290,533 + SO0283 0.20 -0.4
290,536 - SO0283 0.20 +0.1
290,567 - SO0283 0.25 +0.4
290,567 - SO0283 0.25 +0.2
290,567 - SO0283 0.25 +0.2
290,577 - SO0283 0.27 +0.2
290,581 + SO0283 0.28 +0.3
290,581 + SO0283 0.28 +0.8
290,584 - SO0283 0.28 +1.0
290,597 - SO0283 0.30 -0.1
290,630 + SO0283 0.35 +0.4
290,630 + SO0283 0.35 +0.5
290,631 + SO0283 0.36 -1.0
290,631 + SO0283 0.36 +0.6
290,637 + SO0283 0.37 +1.0
290,638 - SO0283 0.37 -0.5
290,638 - SO0283 0.37 -0.0
290,639 - SO0283 0.37 -0.5
290,642 + SO0283 0.37 -0.0
290,650 + SO0283 0.39 -1.2
290,731 + SO0283 0.52 -0.9
290,733 - SO0283 0.52 -2.8
290,760 - SO0283 0.56 -0.9
290,766 + SO0283 0.57 +0.5
290,766 - SO0283 0.57 +0.7
290,825 - SO0283 0.67 +0.8

Or see this region's nucleotide sequence