Experiment: ShewMM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0127 and SO0128 are separated by 106 nucleotides SO0128 and SO0129 are separated by 114 nucleotides SO0129 and SO0130 are separated by 303 nucleotides
SO0127: SO0127 - hypothetical protein (NCBI ptt file), at 134,374 to 135,888
SO0127
SO0128: SO0128 - hypothetical protein (NCBI ptt file), at 135,995 to 136,195
SO0128
SO0129: SO0129 - conserved hypothetical protein TIGR00427 (NCBI ptt file), at 136,310 to 136,903
SO0129
SO0130: SO0130 - protease, putative (NCBI ptt file), at 137,207 to 140,014
SO0130
Position (kb) 136
137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 135.351 kb on + strand, within SO0127 at 135.368 kb on + strand, within SO0127 at 135.423 kb on - strand, within SO0127 at 135.423 kb on - strand, within SO0127 at 135.433 kb on + strand, within SO0127 at 135.441 kb on - strand, within SO0127 at 135.441 kb on - strand, within SO0127 at 135.557 kb on - strand, within SO0127 at 135.657 kb on - strand, within SO0127 at 135.691 kb on + strand, within SO0127 at 135.699 kb on - strand, within SO0127 at 135.810 kb on + strand at 135.810 kb on + strand at 135.862 kb on - strand at 135.885 kb on + strand at 135.885 kb on + strand at 135.885 kb on + strand at 135.885 kb on + strand at 135.888 kb on - strand at 135.893 kb on - strand at 135.893 kb on - strand at 135.893 kb on - strand at 135.893 kb on - strand at 135.893 kb on - strand at 135.894 kb on + strand at 135.976 kb on + strand at 135.984 kb on - strand at 136.214 kb on - strand at 136.214 kb on - strand at 136.429 kb on - strand, within SO0129 at 136.487 kb on + strand, within SO0129 at 136.497 kb on + strand, within SO0129 at 136.662 kb on + strand, within SO0129 at 136.664 kb on - strand, within SO0129 at 136.690 kb on + strand, within SO0129 at 136.829 kb on + strand, within SO0129 at 136.838 kb on - strand, within SO0129 at 137.024 kb on + strand at 137.034 kb on + strand at 137.034 kb on + strand at 137.042 kb on - strand at 137.042 kb on - strand at 137.077 kb on + strand at 137.085 kb on - strand at 137.087 kb on - strand at 137.134 kb on + strand at 137.153 kb on - strand at 137.168 kb on + strand at 137.176 kb on - strand at 137.205 kb on - strand at 137.237 kb on + strand at 137.356 kb on + strand at 137.418 kb on + strand at 137.418 kb on + strand at 137.436 kb on - strand at 137.436 kb on - strand at 137.480 kb on + strand at 137.500 kb on + strand, within SO0130 at 137.505 kb on + strand, within SO0130 at 137.513 kb on - strand, within SO0130 at 137.563 kb on - strand, within SO0130 at 137.604 kb on + strand, within SO0130 at 137.612 kb on - strand, within SO0130 at 137.632 kb on - strand, within SO0130 at 137.709 kb on + strand, within SO0130 at 137.717 kb on - strand, within SO0130 at 137.741 kb on + strand, within SO0130 at 137.774 kb on + strand, within SO0130 at 137.817 kb on + strand, within SO0130 at 137.863 kb on + strand, within SO0130 at 137.871 kb on - strand, within SO0130 at 137.871 kb on - strand, within SO0130 at 137.871 kb on - strand, within SO0130 at 137.871 kb on - strand, within SO0130 at 137.903 kb on + strand, within SO0130
Per-strain Table
Position Strand Gene LocusTag Fraction ShewMM remove 135,351 + SO0127 0.64 -0.7 135,368 + SO0127 0.66 -1.1 135,423 - SO0127 0.69 -0.4 135,423 - SO0127 0.69 -1.2 135,433 + SO0127 0.70 -0.6 135,441 - SO0127 0.70 -1.8 135,441 - SO0127 0.70 -0.2 135,557 - SO0127 0.78 -1.0 135,657 - SO0127 0.85 -0.3 135,691 + SO0127 0.87 -0.9 135,699 - SO0127 0.87 -1.0 135,810 + -1.0 135,810 + -2.0 135,862 - +1.7 135,885 + -0.7 135,885 + -0.1 135,885 + -0.2 135,885 + -0.5 135,888 - +0.3 135,893 - -0.1 135,893 - -0.4 135,893 - -2.3 135,893 - -0.2 135,893 - -1.3 135,894 + -1.7 135,976 + -1.3 135,984 - +0.1 136,214 - -1.0 136,214 - -0.2 136,429 - SO0129 0.20 +2.3 136,487 + SO0129 0.30 +0.2 136,497 + SO0129 0.31 -1.6 136,662 + SO0129 0.59 +0.1 136,664 - SO0129 0.60 -0.4 136,690 + SO0129 0.64 -0.4 136,829 + SO0129 0.87 -0.4 136,838 - SO0129 0.89 -1.3 137,024 + +0.9 137,034 + +0.3 137,034 + +0.2 137,042 - +0.8 137,042 - -0.1 137,077 + +1.3 137,085 - -0.7 137,087 - +0.2 137,134 + +0.3 137,153 - +0.9 137,168 + +0.3 137,176 - +0.4 137,205 - +0.8 137,237 + +0.2 137,356 + -0.3 137,418 + -0.9 137,418 + +0.1 137,436 - +1.0 137,436 - +0.5 137,480 + -0.3 137,500 + SO0130 0.10 +0.8 137,505 + SO0130 0.11 +0.3 137,513 - SO0130 0.11 -0.0 137,563 - SO0130 0.13 +0.8 137,604 + SO0130 0.14 +0.1 137,612 - SO0130 0.14 +0.1 137,632 - SO0130 0.15 +0.3 137,709 + SO0130 0.18 +0.5 137,717 - SO0130 0.18 +0.3 137,741 + SO0130 0.19 -1.2 137,774 + SO0130 0.20 +0.5 137,817 + SO0130 0.22 +0.4 137,863 + SO0130 0.23 +0.2 137,871 - SO0130 0.24 -0.0 137,871 - SO0130 0.24 +0.7 137,871 - SO0130 0.24 +0.2 137,871 - SO0130 0.24 +0.3 137,903 + SO0130 0.25 +0.1
Or see this region's nucleotide sequence