Experiment: ShewMM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0037 and hemF are separated by 28 nucleotides hemF and SO0039 are separated by 29 nucleotides SO0039 and aroE are separated by 189 nucleotides
SO0037: SO0037 - Sua5/YciO/YrdC/YwlC family protein (NCBI ptt file), at 41,557 to 42,123
SO0037
SO0038: hemF - coproporphyrinogen III oxidase, aerobic (NCBI ptt file), at 42,152 to 43,060
hemF
SO0039: SO0039 - hypothetical globin (NCBI ptt file), at 43,090 to 43,527
SO0039
SO0040: aroE - shikimate 5-dehydrogenase (NCBI ptt file), at 43,717 to 44,580
aroE
Position (kb) 43
44 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 42.218 kb on + strand at 42.219 kb on + strand at 42.294 kb on + strand, within hemF at 42.308 kb on - strand, within hemF at 42.308 kb on - strand, within hemF at 42.398 kb on - strand, within hemF at 42.411 kb on + strand, within hemF at 42.419 kb on - strand, within hemF at 42.419 kb on - strand, within hemF at 42.482 kb on - strand, within hemF at 42.529 kb on - strand, within hemF at 42.575 kb on + strand, within hemF at 42.712 kb on + strand, within hemF at 42.722 kb on + strand, within hemF at 42.859 kb on + strand, within hemF at 42.878 kb on - strand, within hemF at 42.927 kb on + strand, within hemF at 42.941 kb on + strand, within hemF at 42.947 kb on + strand, within hemF at 42.996 kb on - strand at 43.008 kb on + strand at 43.027 kb on - strand at 43.027 kb on - strand at 43.035 kb on + strand at 43.043 kb on - strand at 43.051 kb on - strand at 43.053 kb on + strand at 43.081 kb on + strand at 43.087 kb on + strand at 43.281 kb on + strand, within SO0039 at 43.281 kb on + strand, within SO0039 at 43.289 kb on - strand, within SO0039 at 43.289 kb on - strand, within SO0039 at 43.385 kb on - strand, within SO0039 at 43.406 kb on + strand, within SO0039 at 43.487 kb on + strand at 43.522 kb on + strand at 43.530 kb on - strand at 43.563 kb on + strand at 43.682 kb on + strand at 43.690 kb on - strand at 43.690 kb on - strand at 43.690 kb on - strand at 43.695 kb on - strand at 43.730 kb on + strand at 43.825 kb on + strand, within aroE at 43.833 kb on - strand, within aroE at 43.964 kb on + strand, within aroE at 43.983 kb on - strand, within aroE at 43.997 kb on + strand, within aroE at 43.997 kb on + strand, within aroE at 43.997 kb on + strand, within aroE at 43.998 kb on - strand, within aroE at 44.005 kb on - strand, within aroE at 44.005 kb on - strand, within aroE at 44.044 kb on + strand, within aroE at 44.045 kb on + strand, within aroE at 44.045 kb on + strand, within aroE at 44.052 kb on - strand, within aroE at 44.072 kb on - strand, within aroE at 44.072 kb on - strand, within aroE at 44.091 kb on + strand, within aroE at 44.099 kb on - strand, within aroE at 44.164 kb on - strand, within aroE at 44.196 kb on + strand, within aroE at 44.239 kb on - strand, within aroE at 44.239 kb on - strand, within aroE at 44.259 kb on + strand, within aroE at 44.279 kb on - strand, within aroE at 44.317 kb on + strand, within aroE at 44.347 kb on + strand, within aroE at 44.355 kb on - strand, within aroE at 44.380 kb on - strand, within aroE at 44.447 kb on + strand, within aroE at 44.449 kb on + strand, within aroE at 44.491 kb on + strand, within aroE at 44.491 kb on + strand, within aroE at 44.491 kb on + strand, within aroE at 44.491 kb on + strand, within aroE at 44.499 kb on - strand at 44.499 kb on - strand at 44.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ShewMM remove 42,218 + -0.3 42,219 + +0.5 42,294 + hemF SO0038 0.16 -0.7 42,308 - hemF SO0038 0.17 -0.1 42,308 - hemF SO0038 0.17 -1.8 42,398 - hemF SO0038 0.27 +0.5 42,411 + hemF SO0038 0.28 -0.2 42,419 - hemF SO0038 0.29 -0.8 42,419 - hemF SO0038 0.29 -0.3 42,482 - hemF SO0038 0.36 +0.8 42,529 - hemF SO0038 0.41 -1.5 42,575 + hemF SO0038 0.47 -0.6 42,712 + hemF SO0038 0.62 -2.4 42,722 + hemF SO0038 0.63 -1.3 42,859 + hemF SO0038 0.78 -0.3 42,878 - hemF SO0038 0.80 +0.0 42,927 + hemF SO0038 0.85 -1.3 42,941 + hemF SO0038 0.87 +0.1 42,947 + hemF SO0038 0.87 -0.9 42,996 - +0.3 43,008 + -0.5 43,027 - -1.8 43,027 - -0.7 43,035 + -0.6 43,043 - -0.6 43,051 - -0.8 43,053 + +1.1 43,081 + +0.1 43,087 + -0.2 43,281 + SO0039 0.44 -0.2 43,281 + SO0039 0.44 -1.1 43,289 - SO0039 0.45 -0.3 43,289 - SO0039 0.45 +0.4 43,385 - SO0039 0.67 -0.5 43,406 + SO0039 0.72 -0.8 43,487 + +0.4 43,522 + -0.5 43,530 - -0.3 43,563 + -0.3 43,682 + -0.1 43,690 - -3.2 43,690 - -1.2 43,690 - -1.8 43,695 - -3.7 43,730 + -3.2 43,825 + aroE SO0040 0.12 -0.9 43,833 - aroE SO0040 0.13 -1.4 43,964 + aroE SO0040 0.29 -2.6 43,983 - aroE SO0040 0.31 -1.9 43,997 + aroE SO0040 0.32 -1.9 43,997 + aroE SO0040 0.32 -4.2 43,997 + aroE SO0040 0.32 -1.8 43,998 - aroE SO0040 0.33 -3.8 44,005 - aroE SO0040 0.33 -2.5 44,005 - aroE SO0040 0.33 -0.9 44,044 + aroE SO0040 0.38 -3.5 44,045 + aroE SO0040 0.38 -2.3 44,045 + aroE SO0040 0.38 -3.3 44,052 - aroE SO0040 0.39 -3.6 44,072 - aroE SO0040 0.41 -4.2 44,072 - aroE SO0040 0.41 -4.4 44,091 + aroE SO0040 0.43 -3.4 44,099 - aroE SO0040 0.44 -1.2 44,164 - aroE SO0040 0.52 -6.2 44,196 + aroE SO0040 0.55 -3.3 44,239 - aroE SO0040 0.60 -2.2 44,239 - aroE SO0040 0.60 -1.2 44,259 + aroE SO0040 0.63 -1.8 44,279 - aroE SO0040 0.65 -3.9 44,317 + aroE SO0040 0.69 -3.7 44,347 + aroE SO0040 0.73 -3.4 44,355 - aroE SO0040 0.74 -4.4 44,380 - aroE SO0040 0.77 -3.6 44,447 + aroE SO0040 0.84 -3.4 44,449 + aroE SO0040 0.85 -2.9 44,491 + aroE SO0040 0.90 -1.3 44,491 + aroE SO0040 0.90 -3.4 44,491 + aroE SO0040 0.90 -4.1 44,491 + aroE SO0040 0.90 -4.5 44,499 - -4.3 44,499 - -3.3 44,499 - -3.0
Or see this region's nucleotide sequence