Experiment: m.b. 40C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_789 and HP15_790 are separated by 65 nucleotides HP15_790 and HP15_791 are separated by 21 nucleotides
HP15_789: HP15_789 - cysteine synthase B, at 802,093 to 802,986
_789
HP15_790: HP15_790 - 23S rRNA 5-methyluridine methyltransferase, at 803,052 to 804,362
_790
HP15_791: HP15_791 - (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA, at 804,384 to 806,657
_791
Position (kb) 803
804
805 Strain fitness (log2 ratio) -1
0
1
2 at 803.156 kb on + strand at 803.164 kb on - strand at 803.220 kb on + strand, within HP15_790 at 803.235 kb on + strand, within HP15_790 at 803.406 kb on - strand, within HP15_790 at 803.406 kb on - strand, within HP15_790 at 803.446 kb on - strand, within HP15_790 at 803.460 kb on - strand, within HP15_790 at 803.526 kb on - strand, within HP15_790 at 803.595 kb on - strand, within HP15_790 at 803.628 kb on + strand, within HP15_790 at 803.647 kb on + strand, within HP15_790 at 803.660 kb on + strand, within HP15_790 at 803.734 kb on + strand, within HP15_790 at 803.743 kb on - strand, within HP15_790 at 803.743 kb on - strand, within HP15_790 at 803.855 kb on - strand, within HP15_790 at 803.877 kb on + strand, within HP15_790 at 803.906 kb on + strand, within HP15_790 at 803.936 kb on + strand, within HP15_790 at 803.936 kb on + strand, within HP15_790 at 804.007 kb on - strand, within HP15_790 at 804.084 kb on - strand, within HP15_790 at 804.102 kb on + strand, within HP15_790 at 804.102 kb on + strand, within HP15_790 at 804.102 kb on + strand, within HP15_790 at 804.110 kb on - strand, within HP15_790 at 804.253 kb on + strand at 804.261 kb on - strand at 804.271 kb on + strand at 804.291 kb on + strand at 804.326 kb on - strand at 804.381 kb on + strand at 804.467 kb on - strand at 804.525 kb on - strand at 804.640 kb on - strand, within HP15_791 at 804.989 kb on + strand, within HP15_791 at 805.005 kb on + strand, within HP15_791 at 805.024 kb on + strand, within HP15_791 at 805.210 kb on - strand, within HP15_791 at 805.210 kb on - strand, within HP15_791 at 805.210 kb on - strand, within HP15_791 at 805.228 kb on - strand, within HP15_791 at 805.271 kb on + strand, within HP15_791 at 805.303 kb on + strand, within HP15_791 at 805.343 kb on - strand, within HP15_791
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 40C remove 803,156 + -0.5 803,164 - -0.2 803,220 + HP15_790 0.13 -0.8 803,235 + HP15_790 0.14 -0.3 803,406 - HP15_790 0.27 -0.3 803,406 - HP15_790 0.27 +0.0 803,446 - HP15_790 0.30 -1.5 803,460 - HP15_790 0.31 -0.1 803,526 - HP15_790 0.36 +0.0 803,595 - HP15_790 0.41 -0.6 803,628 + HP15_790 0.44 +0.5 803,647 + HP15_790 0.45 +0.6 803,660 + HP15_790 0.46 -1.2 803,734 + HP15_790 0.52 -0.5 803,743 - HP15_790 0.53 -0.3 803,743 - HP15_790 0.53 -1.4 803,855 - HP15_790 0.61 -0.3 803,877 + HP15_790 0.63 -0.0 803,906 + HP15_790 0.65 -0.5 803,936 + HP15_790 0.67 -0.4 803,936 + HP15_790 0.67 +0.2 804,007 - HP15_790 0.73 -0.3 804,084 - HP15_790 0.79 -0.5 804,102 + HP15_790 0.80 -0.4 804,102 + HP15_790 0.80 +0.2 804,102 + HP15_790 0.80 +0.6 804,110 - HP15_790 0.81 -1.3 804,253 + -0.6 804,261 - -1.0 804,271 + -0.6 804,291 + -0.5 804,326 - +0.1 804,381 + +0.5 804,467 - -0.8 804,525 - -0.7 804,640 - HP15_791 0.11 -0.3 804,989 + HP15_791 0.27 +0.3 805,005 + HP15_791 0.27 -0.1 805,024 + HP15_791 0.28 -1.2 805,210 - HP15_791 0.36 -0.1 805,210 - HP15_791 0.36 -0.2 805,210 - HP15_791 0.36 -0.8 805,228 - HP15_791 0.37 -1.1 805,271 + HP15_791 0.39 +0.1 805,303 + HP15_791 0.40 -0.1 805,343 - HP15_791 0.42 +1.8
Or see this region's nucleotide sequence