Strain Fitness in Marinobacter adhaerens HP15 around HP15_4117

Experiment: m.b. 40C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4115 and HP15_4116 are separated by 106 nucleotidesHP15_4116 and HP15_4117 are separated by 97 nucleotidesHP15_4117 and HP15_4118 overlap by 4 nucleotides HP15_4115: HP15_4115 - sensory box/GGDEF/EAL family protein, at 4,349,658 to 4,352,093 _4115 HP15_4116: HP15_4116 - SirA-like protein, at 4,352,200 to 4,352,334 _4116 HP15_4117: HP15_4117 - membrane or secreted protein, at 4,352,432 to 4,352,560 _4117 HP15_4118: HP15_4118 - formate dehydrogenase, gamma subunit, at 4,352,557 to 4,353,600 _4118 Position (kb) 4352 4353Strain fitness (log2 ratio) -1 0 1 2at 4351.488 kb on + strand, within HP15_4115at 4351.528 kb on - strand, within HP15_4115at 4351.605 kb on - strand, within HP15_4115at 4351.605 kb on - strand, within HP15_4115at 4351.668 kb on + strand, within HP15_4115at 4351.676 kb on - strand, within HP15_4115at 4351.676 kb on - strand, within HP15_4115at 4351.748 kb on + strand, within HP15_4115at 4351.756 kb on - strand, within HP15_4115at 4351.943 kb on + strandat 4351.943 kb on + strandat 4351.948 kb on + strandat 4351.951 kb on - strandat 4351.951 kb on - strandat 4351.951 kb on - strandat 4351.984 kb on - strandat 4352.014 kb on + strandat 4352.042 kb on + strandat 4352.089 kb on - strandat 4352.163 kb on + strandat 4352.224 kb on + strand, within HP15_4116at 4352.295 kb on + strand, within HP15_4116at 4352.344 kb on + strandat 4352.395 kb on - strandat 4352.395 kb on - strandat 4352.395 kb on - strandat 4352.420 kb on + strandat 4352.420 kb on + strandat 4352.420 kb on + strandat 4352.428 kb on - strandat 4352.433 kb on - strandat 4352.457 kb on + strand, within HP15_4117at 4352.465 kb on - strand, within HP15_4117at 4352.684 kb on - strand, within HP15_4118at 4352.713 kb on - strand, within HP15_4118at 4352.738 kb on - strand, within HP15_4118at 4352.857 kb on - strand, within HP15_4118at 4352.971 kb on + strand, within HP15_4118at 4353.019 kb on + strand, within HP15_4118at 4353.051 kb on - strand, within HP15_4118at 4353.185 kb on - strand, within HP15_4118at 4353.236 kb on + strand, within HP15_4118at 4353.244 kb on - strand, within HP15_4118at 4353.254 kb on + strand, within HP15_4118at 4353.375 kb on + strand, within HP15_4118at 4353.383 kb on - strand, within HP15_4118at 4353.393 kb on - strand, within HP15_4118at 4353.412 kb on - strand, within HP15_4118

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 40C
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4,351,488 + HP15_4115 0.75 -0.0
4,351,528 - HP15_4115 0.77 -0.0
4,351,605 - HP15_4115 0.80 -0.1
4,351,605 - HP15_4115 0.80 -1.7
4,351,668 + HP15_4115 0.83 -0.2
4,351,676 - HP15_4115 0.83 +0.2
4,351,676 - HP15_4115 0.83 -0.1
4,351,748 + HP15_4115 0.86 -0.4
4,351,756 - HP15_4115 0.86 +0.6
4,351,943 + -0.3
4,351,943 + -0.9
4,351,948 + +0.3
4,351,951 - +0.2
4,351,951 - -0.2
4,351,951 - -0.2
4,351,984 - +0.6
4,352,014 + +0.4
4,352,042 + +0.4
4,352,089 - -0.4
4,352,163 + +0.5
4,352,224 + HP15_4116 0.18 +1.0
4,352,295 + HP15_4116 0.70 -0.7
4,352,344 + -0.3
4,352,395 - -0.1
4,352,395 - +0.1
4,352,395 - -0.4
4,352,420 + +1.8
4,352,420 + +0.3
4,352,420 + +1.0
4,352,428 - -0.2
4,352,433 - +2.4
4,352,457 + HP15_4117 0.19 -0.4
4,352,465 - HP15_4117 0.26 +1.0
4,352,684 - HP15_4118 0.12 -0.5
4,352,713 - HP15_4118 0.15 +0.1
4,352,738 - HP15_4118 0.17 +0.5
4,352,857 - HP15_4118 0.29 +0.0
4,352,971 + HP15_4118 0.40 +0.5
4,353,019 + HP15_4118 0.44 -0.5
4,353,051 - HP15_4118 0.47 +0.2
4,353,185 - HP15_4118 0.60 +0.2
4,353,236 + HP15_4118 0.65 -0.3
4,353,244 - HP15_4118 0.66 -0.7
4,353,254 + HP15_4118 0.67 +0.1
4,353,375 + HP15_4118 0.78 +0.6
4,353,383 - HP15_4118 0.79 -1.3
4,353,393 - HP15_4118 0.80 -0.7
4,353,412 - HP15_4118 0.82 -0.3

Or see this region's nucleotide sequence