Strain Fitness in Marinobacter adhaerens HP15 around HP15_3527

Experiment: m.b. 40C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3526 and HP15_3527 are separated by 252 nucleotidesHP15_3527 and HP15_3528 are separated by 19 nucleotides HP15_3526: HP15_3526 - conserved hypothetical protein, at 3,713,185 to 3,714,210 _3526 HP15_3527: HP15_3527 - GGDEF family protein, at 3,714,463 to 3,715,530 _3527 HP15_3528: HP15_3528 - mesoderm specific transcript isoform b isoform-like protein, at 3,715,550 to 3,716,617 _3528 Position (kb) 3714 3715 3716Strain fitness (log2 ratio) -2 -1 0 1at 3713.580 kb on - strand, within HP15_3526at 3713.596 kb on + strand, within HP15_3526at 3713.609 kb on + strand, within HP15_3526at 3713.676 kb on + strand, within HP15_3526at 3713.969 kb on + strand, within HP15_3526at 3714.075 kb on + strand, within HP15_3526at 3714.142 kb on - strandat 3714.142 kb on - strandat 3714.142 kb on - strandat 3714.142 kb on - strandat 3714.144 kb on - strandat 3714.210 kb on - strandat 3714.284 kb on - strandat 3714.403 kb on + strandat 3714.411 kb on - strandat 3714.411 kb on - strandat 3714.481 kb on + strandat 3714.514 kb on + strandat 3714.516 kb on + strandat 3714.734 kb on - strand, within HP15_3527at 3714.739 kb on - strand, within HP15_3527at 3714.753 kb on - strand, within HP15_3527at 3714.758 kb on - strand, within HP15_3527at 3714.771 kb on + strand, within HP15_3527at 3714.771 kb on + strand, within HP15_3527at 3714.779 kb on - strand, within HP15_3527at 3714.796 kb on + strand, within HP15_3527at 3714.864 kb on - strand, within HP15_3527at 3714.990 kb on - strand, within HP15_3527at 3715.026 kb on - strand, within HP15_3527at 3715.118 kb on + strand, within HP15_3527at 3715.119 kb on + strand, within HP15_3527at 3715.157 kb on + strand, within HP15_3527at 3715.201 kb on - strand, within HP15_3527at 3715.240 kb on - strand, within HP15_3527at 3715.355 kb on + strand, within HP15_3527at 3715.388 kb on - strand, within HP15_3527at 3715.389 kb on - strand, within HP15_3527at 3715.394 kb on - strand, within HP15_3527at 3715.503 kb on + strandat 3715.503 kb on + strandat 3715.504 kb on - strandat 3715.506 kb on - strandat 3715.584 kb on - strandat 3715.612 kb on + strandat 3715.656 kb on - strandat 3715.666 kb on + strand, within HP15_3528at 3715.743 kb on + strand, within HP15_3528at 3715.751 kb on - strand, within HP15_3528at 3715.781 kb on + strand, within HP15_3528at 3715.839 kb on + strand, within HP15_3528at 3715.931 kb on + strand, within HP15_3528at 3715.939 kb on - strand, within HP15_3528at 3716.122 kb on + strand, within HP15_3528at 3716.140 kb on - strand, within HP15_3528at 3716.146 kb on + strand, within HP15_3528at 3716.159 kb on - strand, within HP15_3528at 3716.162 kb on + strand, within HP15_3528at 3716.217 kb on - strand, within HP15_3528at 3716.404 kb on + strand, within HP15_3528at 3716.404 kb on + strand, within HP15_3528at 3716.404 kb on + strand, within HP15_3528at 3716.410 kb on - strand, within HP15_3528at 3716.412 kb on - strand, within HP15_3528at 3716.412 kb on - strand, within HP15_3528at 3716.412 kb on - strand, within HP15_3528at 3716.412 kb on - strand, within HP15_3528at 3716.459 kb on + strand, within HP15_3528at 3716.484 kb on - strand, within HP15_3528at 3716.528 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 40C
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3,713,580 - HP15_3526 0.38 +0.1
3,713,596 + HP15_3526 0.40 +0.6
3,713,609 + HP15_3526 0.41 -0.4
3,713,676 + HP15_3526 0.48 -1.1
3,713,969 + HP15_3526 0.76 +0.1
3,714,075 + HP15_3526 0.87 -0.7
3,714,142 - +0.8
3,714,142 - +0.2
3,714,142 - +0.3
3,714,142 - -0.5
3,714,144 - -0.7
3,714,210 - +0.6
3,714,284 - +0.3
3,714,403 + +0.9
3,714,411 - -0.7
3,714,411 - -1.2
3,714,481 + -0.0
3,714,514 + +0.1
3,714,516 + -1.5
3,714,734 - HP15_3527 0.25 -0.3
3,714,739 - HP15_3527 0.26 +0.3
3,714,753 - HP15_3527 0.27 +0.1
3,714,758 - HP15_3527 0.28 +0.4
3,714,771 + HP15_3527 0.29 +0.7
3,714,771 + HP15_3527 0.29 -0.1
3,714,779 - HP15_3527 0.30 -0.3
3,714,796 + HP15_3527 0.31 +0.3
3,714,864 - HP15_3527 0.38 +0.4
3,714,990 - HP15_3527 0.49 +0.3
3,715,026 - HP15_3527 0.53 +1.0
3,715,118 + HP15_3527 0.61 +0.2
3,715,119 + HP15_3527 0.61 +0.4
3,715,157 + HP15_3527 0.65 +0.9
3,715,201 - HP15_3527 0.69 +0.3
3,715,240 - HP15_3527 0.73 +0.9
3,715,355 + HP15_3527 0.84 +0.5
3,715,388 - HP15_3527 0.87 -0.2
3,715,389 - HP15_3527 0.87 -0.4
3,715,394 - HP15_3527 0.87 +0.6
3,715,503 + -0.1
3,715,503 + +0.0
3,715,504 - +0.4
3,715,506 - +0.3
3,715,584 - -0.2
3,715,612 + -1.9
3,715,656 - -0.8
3,715,666 + HP15_3528 0.11 -1.2
3,715,743 + HP15_3528 0.18 -0.2
3,715,751 - HP15_3528 0.19 +0.8
3,715,781 + HP15_3528 0.22 -0.6
3,715,839 + HP15_3528 0.27 +0.1
3,715,931 + HP15_3528 0.36 +1.3
3,715,939 - HP15_3528 0.36 +0.6
3,716,122 + HP15_3528 0.54 +0.7
3,716,140 - HP15_3528 0.55 -0.6
3,716,146 + HP15_3528 0.56 +0.0
3,716,159 - HP15_3528 0.57 +0.0
3,716,162 + HP15_3528 0.57 -0.8
3,716,217 - HP15_3528 0.62 +0.5
3,716,404 + HP15_3528 0.80 -0.1
3,716,404 + HP15_3528 0.80 -0.1
3,716,404 + HP15_3528 0.80 +0.9
3,716,410 - HP15_3528 0.81 -1.5
3,716,412 - HP15_3528 0.81 -0.8
3,716,412 - HP15_3528 0.81 -0.2
3,716,412 - HP15_3528 0.81 +0.4
3,716,412 - HP15_3528 0.81 -0.0
3,716,459 + HP15_3528 0.85 +1.0
3,716,484 - HP15_3528 0.87 +0.2
3,716,528 + -0.9

Or see this region's nucleotide sequence