Experiment: m.b. 40C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2945 and HP15_2946 are separated by 180 nucleotides HP15_2946 and HP15_2947 are separated by 12 nucleotides HP15_2947 and HP15_2948 are separated by 190 nucleotides
HP15_2945: HP15_2945 - bile acid: sodium symporter, at 3,087,700 to 3,088,620
_2945
HP15_2946: HP15_2946 - acyltransferase, WS/DGAT/MGAT, at 3,088,801 to 3,090,270
_2946
HP15_2947: HP15_2947 - transcriptional regulator, TetR family protein, at 3,090,283 to 3,090,909
_2947
HP15_2948: HP15_2948 - oxidoreductase FAD-binding domain protein, at 3,091,100 to 3,092,209
_2948
Position (kb)
3088
3089
3090
3091 Strain fitness (log2 ratio)
-1
0
1 at 3087.871 kb on + strand, within HP15_2945 at 3087.903 kb on + strand, within HP15_2945 at 3087.947 kb on - strand, within HP15_2945 at 3087.947 kb on - strand, within HP15_2945 at 3088.075 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.286 kb on + strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.293 kb on + strand, within HP15_2945 at 3088.293 kb on + strand, within HP15_2945 at 3088.298 kb on + strand, within HP15_2945 at 3088.301 kb on - strand, within HP15_2945 at 3088.341 kb on + strand, within HP15_2945 at 3088.517 kb on - strand, within HP15_2945 at 3088.672 kb on + strand at 3088.691 kb on + strand at 3088.834 kb on - strand at 3088.884 kb on - strand at 3088.973 kb on + strand, within HP15_2946 at 3088.981 kb on - strand, within HP15_2946 at 3089.069 kb on + strand, within HP15_2946 at 3089.127 kb on + strand, within HP15_2946 at 3089.135 kb on - strand, within HP15_2946 at 3089.238 kb on + strand, within HP15_2946 at 3089.350 kb on + strand, within HP15_2946 at 3089.382 kb on + strand, within HP15_2946 at 3089.417 kb on + strand, within HP15_2946 at 3089.535 kb on + strand, within HP15_2946 at 3089.535 kb on + strand, within HP15_2946 at 3089.570 kb on + strand, within HP15_2946 at 3089.680 kb on + strand, within HP15_2946 at 3089.691 kb on - strand, within HP15_2946 at 3089.828 kb on + strand, within HP15_2946 at 3089.861 kb on - strand, within HP15_2946 at 3089.874 kb on + strand, within HP15_2946 at 3089.921 kb on + strand, within HP15_2946 at 3089.984 kb on - strand, within HP15_2946 at 3090.113 kb on + strand, within HP15_2946 at 3090.154 kb on + strand at 3090.273 kb on - strand at 3090.413 kb on - strand, within HP15_2947 at 3090.416 kb on + strand, within HP15_2947 at 3090.485 kb on - strand, within HP15_2947 at 3090.500 kb on - strand, within HP15_2947 at 3090.549 kb on - strand, within HP15_2947 at 3090.551 kb on + strand, within HP15_2947 at 3090.564 kb on - strand, within HP15_2947 at 3090.723 kb on + strand, within HP15_2947 at 3090.852 kb on - strand at 3090.885 kb on + strand at 3090.916 kb on - strand at 3090.949 kb on + strand at 3091.008 kb on - strand at 3091.110 kb on - strand at 3091.176 kb on - strand at 3091.245 kb on + strand, within HP15_2948 at 3091.245 kb on + strand, within HP15_2948 at 3091.247 kb on + strand, within HP15_2948 at 3091.250 kb on + strand, within HP15_2948
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 40C remove 3,087,871 + HP15_2945 0.19 -0.3 3,087,903 + HP15_2945 0.22 -0.1 3,087,947 - HP15_2945 0.27 -0.3 3,087,947 - HP15_2945 0.27 -0.4 3,088,075 + HP15_2945 0.41 +0.0 3,088,281 + HP15_2945 0.63 -0.3 3,088,281 + HP15_2945 0.63 +0.7 3,088,281 + HP15_2945 0.63 +0.3 3,088,281 + HP15_2945 0.63 -0.0 3,088,281 + HP15_2945 0.63 +0.0 3,088,281 + HP15_2945 0.63 +0.3 3,088,281 + HP15_2945 0.63 -0.4 3,088,286 + HP15_2945 0.64 -0.7 3,088,289 - HP15_2945 0.64 -0.4 3,088,289 - HP15_2945 0.64 +0.1 3,088,289 - HP15_2945 0.64 +0.1 3,088,289 - HP15_2945 0.64 -0.3 3,088,289 - HP15_2945 0.64 -0.5 3,088,289 - HP15_2945 0.64 -0.5 3,088,289 - HP15_2945 0.64 +0.3 3,088,293 + HP15_2945 0.64 -0.7 3,088,293 + HP15_2945 0.64 +0.1 3,088,298 + HP15_2945 0.65 +0.4 3,088,301 - HP15_2945 0.65 +0.4 3,088,341 + HP15_2945 0.70 -0.3 3,088,517 - HP15_2945 0.89 +0.1 3,088,672 + -0.6 3,088,691 + +0.0 3,088,834 - -0.0 3,088,884 - +0.4 3,088,973 + HP15_2946 0.12 +0.2 3,088,981 - HP15_2946 0.12 -0.1 3,089,069 + HP15_2946 0.18 -0.6 3,089,127 + HP15_2946 0.22 +0.2 3,089,135 - HP15_2946 0.23 -0.9 3,089,238 + HP15_2946 0.30 -0.9 3,089,350 + HP15_2946 0.37 +0.5 3,089,382 + HP15_2946 0.40 -1.1 3,089,417 + HP15_2946 0.42 -0.4 3,089,535 + HP15_2946 0.50 -0.8 3,089,535 + HP15_2946 0.50 -0.3 3,089,570 + HP15_2946 0.52 +0.4 3,089,680 + HP15_2946 0.60 -0.1 3,089,691 - HP15_2946 0.61 -1.2 3,089,828 + HP15_2946 0.70 -0.4 3,089,861 - HP15_2946 0.72 +0.6 3,089,874 + HP15_2946 0.73 -0.7 3,089,921 + HP15_2946 0.76 +0.4 3,089,984 - HP15_2946 0.80 +0.5 3,090,113 + HP15_2946 0.89 -0.3 3,090,154 + +0.8 3,090,273 - -0.9 3,090,413 - HP15_2947 0.21 -1.2 3,090,416 + HP15_2947 0.21 +0.8 3,090,485 - HP15_2947 0.32 -0.6 3,090,500 - HP15_2947 0.35 -1.7 3,090,549 - HP15_2947 0.42 +1.6 3,090,551 + HP15_2947 0.43 -0.7 3,090,564 - HP15_2947 0.45 +0.1 3,090,723 + HP15_2947 0.70 +0.4 3,090,852 - +0.9 3,090,885 + -0.1 3,090,916 - +0.0 3,090,949 + -0.3 3,091,008 - +0.1 3,091,110 - +0.1 3,091,176 - +0.8 3,091,245 + HP15_2948 0.13 -0.1 3,091,245 + HP15_2948 0.13 -0.0 3,091,247 + HP15_2948 0.13 -0.3 3,091,250 + HP15_2948 0.14 +0.5
Or see this region's nucleotide sequence