Strain Fitness in Marinobacter adhaerens HP15 around HP15_2946

Experiment: m.b. 40C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2945 and HP15_2946 are separated by 180 nucleotidesHP15_2946 and HP15_2947 are separated by 12 nucleotidesHP15_2947 and HP15_2948 are separated by 190 nucleotides HP15_2945: HP15_2945 - bile acid: sodium symporter, at 3,087,700 to 3,088,620 _2945 HP15_2946: HP15_2946 - acyltransferase, WS/DGAT/MGAT, at 3,088,801 to 3,090,270 _2946 HP15_2947: HP15_2947 - transcriptional regulator, TetR family protein, at 3,090,283 to 3,090,909 _2947 HP15_2948: HP15_2948 - oxidoreductase FAD-binding domain protein, at 3,091,100 to 3,092,209 _2948 Position (kb) 3088 3089 3090 3091Strain fitness (log2 ratio) -1 0 1at 3087.871 kb on + strand, within HP15_2945at 3087.903 kb on + strand, within HP15_2945at 3087.947 kb on - strand, within HP15_2945at 3087.947 kb on - strand, within HP15_2945at 3088.075 kb on + strand, within HP15_2945at 3088.281 kb on + strand, within HP15_2945at 3088.281 kb on + strand, within HP15_2945at 3088.281 kb on + strand, within HP15_2945at 3088.281 kb on + strand, within HP15_2945at 3088.281 kb on + strand, within HP15_2945at 3088.281 kb on + strand, within HP15_2945at 3088.281 kb on + strand, within HP15_2945at 3088.286 kb on + strand, within HP15_2945at 3088.289 kb on - strand, within HP15_2945at 3088.289 kb on - strand, within HP15_2945at 3088.289 kb on - strand, within HP15_2945at 3088.289 kb on - strand, within HP15_2945at 3088.289 kb on - strand, within HP15_2945at 3088.289 kb on - strand, within HP15_2945at 3088.289 kb on - strand, within HP15_2945at 3088.293 kb on + strand, within HP15_2945at 3088.293 kb on + strand, within HP15_2945at 3088.298 kb on + strand, within HP15_2945at 3088.301 kb on - strand, within HP15_2945at 3088.341 kb on + strand, within HP15_2945at 3088.517 kb on - strand, within HP15_2945at 3088.672 kb on + strandat 3088.691 kb on + strandat 3088.834 kb on - strandat 3088.884 kb on - strandat 3088.973 kb on + strand, within HP15_2946at 3088.981 kb on - strand, within HP15_2946at 3089.069 kb on + strand, within HP15_2946at 3089.127 kb on + strand, within HP15_2946at 3089.135 kb on - strand, within HP15_2946at 3089.238 kb on + strand, within HP15_2946at 3089.350 kb on + strand, within HP15_2946at 3089.382 kb on + strand, within HP15_2946at 3089.417 kb on + strand, within HP15_2946at 3089.535 kb on + strand, within HP15_2946at 3089.535 kb on + strand, within HP15_2946at 3089.570 kb on + strand, within HP15_2946at 3089.680 kb on + strand, within HP15_2946at 3089.691 kb on - strand, within HP15_2946at 3089.828 kb on + strand, within HP15_2946at 3089.861 kb on - strand, within HP15_2946at 3089.874 kb on + strand, within HP15_2946at 3089.921 kb on + strand, within HP15_2946at 3089.984 kb on - strand, within HP15_2946at 3090.113 kb on + strand, within HP15_2946at 3090.154 kb on + strandat 3090.273 kb on - strandat 3090.413 kb on - strand, within HP15_2947at 3090.416 kb on + strand, within HP15_2947at 3090.485 kb on - strand, within HP15_2947at 3090.500 kb on - strand, within HP15_2947at 3090.549 kb on - strand, within HP15_2947at 3090.551 kb on + strand, within HP15_2947at 3090.564 kb on - strand, within HP15_2947at 3090.723 kb on + strand, within HP15_2947at 3090.852 kb on - strandat 3090.885 kb on + strandat 3090.916 kb on - strandat 3090.949 kb on + strandat 3091.008 kb on - strandat 3091.110 kb on - strandat 3091.176 kb on - strandat 3091.245 kb on + strand, within HP15_2948at 3091.245 kb on + strand, within HP15_2948at 3091.247 kb on + strand, within HP15_2948at 3091.250 kb on + strand, within HP15_2948

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 40C
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3,087,871 + HP15_2945 0.19 -0.3
3,087,903 + HP15_2945 0.22 -0.1
3,087,947 - HP15_2945 0.27 -0.3
3,087,947 - HP15_2945 0.27 -0.4
3,088,075 + HP15_2945 0.41 +0.0
3,088,281 + HP15_2945 0.63 -0.3
3,088,281 + HP15_2945 0.63 +0.7
3,088,281 + HP15_2945 0.63 +0.3
3,088,281 + HP15_2945 0.63 -0.0
3,088,281 + HP15_2945 0.63 +0.0
3,088,281 + HP15_2945 0.63 +0.3
3,088,281 + HP15_2945 0.63 -0.4
3,088,286 + HP15_2945 0.64 -0.7
3,088,289 - HP15_2945 0.64 -0.4
3,088,289 - HP15_2945 0.64 +0.1
3,088,289 - HP15_2945 0.64 +0.1
3,088,289 - HP15_2945 0.64 -0.3
3,088,289 - HP15_2945 0.64 -0.5
3,088,289 - HP15_2945 0.64 -0.5
3,088,289 - HP15_2945 0.64 +0.3
3,088,293 + HP15_2945 0.64 -0.7
3,088,293 + HP15_2945 0.64 +0.1
3,088,298 + HP15_2945 0.65 +0.4
3,088,301 - HP15_2945 0.65 +0.4
3,088,341 + HP15_2945 0.70 -0.3
3,088,517 - HP15_2945 0.89 +0.1
3,088,672 + -0.6
3,088,691 + +0.0
3,088,834 - -0.0
3,088,884 - +0.4
3,088,973 + HP15_2946 0.12 +0.2
3,088,981 - HP15_2946 0.12 -0.1
3,089,069 + HP15_2946 0.18 -0.6
3,089,127 + HP15_2946 0.22 +0.2
3,089,135 - HP15_2946 0.23 -0.9
3,089,238 + HP15_2946 0.30 -0.9
3,089,350 + HP15_2946 0.37 +0.5
3,089,382 + HP15_2946 0.40 -1.1
3,089,417 + HP15_2946 0.42 -0.4
3,089,535 + HP15_2946 0.50 -0.8
3,089,535 + HP15_2946 0.50 -0.3
3,089,570 + HP15_2946 0.52 +0.4
3,089,680 + HP15_2946 0.60 -0.1
3,089,691 - HP15_2946 0.61 -1.2
3,089,828 + HP15_2946 0.70 -0.4
3,089,861 - HP15_2946 0.72 +0.6
3,089,874 + HP15_2946 0.73 -0.7
3,089,921 + HP15_2946 0.76 +0.4
3,089,984 - HP15_2946 0.80 +0.5
3,090,113 + HP15_2946 0.89 -0.3
3,090,154 + +0.8
3,090,273 - -0.9
3,090,413 - HP15_2947 0.21 -1.2
3,090,416 + HP15_2947 0.21 +0.8
3,090,485 - HP15_2947 0.32 -0.6
3,090,500 - HP15_2947 0.35 -1.7
3,090,549 - HP15_2947 0.42 +1.6
3,090,551 + HP15_2947 0.43 -0.7
3,090,564 - HP15_2947 0.45 +0.1
3,090,723 + HP15_2947 0.70 +0.4
3,090,852 - +0.9
3,090,885 + -0.1
3,090,916 - +0.0
3,090,949 + -0.3
3,091,008 - +0.1
3,091,110 - +0.1
3,091,176 - +0.8
3,091,245 + HP15_2948 0.13 -0.1
3,091,245 + HP15_2948 0.13 -0.0
3,091,247 + HP15_2948 0.13 -0.3
3,091,250 + HP15_2948 0.14 +0.5

Or see this region's nucleotide sequence