Strain Fitness in Marinobacter adhaerens HP15 around HP15_2905

Experiment: m.b. 40C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2904 and HP15_2905 are separated by 82 nucleotidesHP15_2905 and HP15_2906 are separated by 205 nucleotidesHP15_2906 and HP15_2907 are separated by 69 nucleotides HP15_2904: HP15_2904 - conserved hypothetical protein, at 3,042,236 to 3,043,087 _2904 HP15_2905: HP15_2905 - lipoprotein-like protein, at 3,043,170 to 3,044,630 _2905 HP15_2906: HP15_2906 - conserved hypothetical protein, at 3,044,836 to 3,045,012 _2906 HP15_2907: HP15_2907 - extracellular solute-binding protein, family 3, at 3,045,082 to 3,045,864 _2907 Position (kb) 3043 3044 3045Strain fitness (log2 ratio) -1 0 1 2 3at 3043.243 kb on - strandat 3043.293 kb on - strandat 3043.296 kb on + strandat 3043.303 kb on - strandat 3043.361 kb on + strand, within HP15_2905at 3043.448 kb on + strand, within HP15_2905at 3043.550 kb on + strand, within HP15_2905at 3043.558 kb on - strand, within HP15_2905at 3043.568 kb on + strand, within HP15_2905at 3043.607 kb on + strand, within HP15_2905at 3043.615 kb on - strand, within HP15_2905at 3043.625 kb on - strand, within HP15_2905at 3043.721 kb on + strand, within HP15_2905at 3043.789 kb on + strand, within HP15_2905at 3043.917 kb on + strand, within HP15_2905at 3044.027 kb on - strand, within HP15_2905at 3044.156 kb on + strand, within HP15_2905at 3044.157 kb on - strand, within HP15_2905at 3044.157 kb on - strand, within HP15_2905at 3044.164 kb on + strand, within HP15_2905at 3044.177 kb on - strand, within HP15_2905at 3044.231 kb on + strand, within HP15_2905at 3044.239 kb on - strand, within HP15_2905at 3044.251 kb on - strand, within HP15_2905at 3044.343 kb on + strand, within HP15_2905at 3044.343 kb on + strand, within HP15_2905at 3044.343 kb on + strand, within HP15_2905at 3044.343 kb on + strand, within HP15_2905at 3044.353 kb on + strand, within HP15_2905at 3044.516 kb on + strandat 3044.587 kb on + strandat 3044.898 kb on + strand, within HP15_2906at 3045.018 kb on + strandat 3045.111 kb on + strandat 3045.123 kb on - strandat 3045.166 kb on - strand, within HP15_2907at 3045.204 kb on + strand, within HP15_2907at 3045.206 kb on + strand, within HP15_2907at 3045.206 kb on + strand, within HP15_2907at 3045.206 kb on + strand, within HP15_2907at 3045.214 kb on + strand, within HP15_2907at 3045.220 kb on - strand, within HP15_2907at 3045.230 kb on - strand, within HP15_2907at 3045.333 kb on - strand, within HP15_2907at 3045.359 kb on + strand, within HP15_2907at 3045.424 kb on - strand, within HP15_2907at 3045.450 kb on + strand, within HP15_2907at 3045.452 kb on - strand, within HP15_2907at 3045.500 kb on - strand, within HP15_2907at 3045.500 kb on - strand, within HP15_2907at 3045.500 kb on - strand, within HP15_2907at 3045.512 kb on + strand, within HP15_2907at 3045.520 kb on - strand, within HP15_2907at 3045.536 kb on + strand, within HP15_2907at 3045.541 kb on + strand, within HP15_2907

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 40C
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3,043,243 - +0.2
3,043,293 - +1.1
3,043,296 + +2.1
3,043,303 - -0.0
3,043,361 + HP15_2905 0.13 +0.8
3,043,448 + HP15_2905 0.19 +1.0
3,043,550 + HP15_2905 0.26 +1.7
3,043,558 - HP15_2905 0.27 +1.0
3,043,568 + HP15_2905 0.27 +1.9
3,043,607 + HP15_2905 0.30 +2.8
3,043,615 - HP15_2905 0.30 +3.6
3,043,625 - HP15_2905 0.31 -0.2
3,043,721 + HP15_2905 0.38 +1.8
3,043,789 + HP15_2905 0.42 +1.2
3,043,917 + HP15_2905 0.51 +1.9
3,044,027 - HP15_2905 0.59 +1.1
3,044,156 + HP15_2905 0.67 +1.4
3,044,157 - HP15_2905 0.68 +0.8
3,044,157 - HP15_2905 0.68 +2.0
3,044,164 + HP15_2905 0.68 +2.4
3,044,177 - HP15_2905 0.69 +0.3
3,044,231 + HP15_2905 0.73 +1.2
3,044,239 - HP15_2905 0.73 +1.5
3,044,251 - HP15_2905 0.74 +1.2
3,044,343 + HP15_2905 0.80 +2.9
3,044,343 + HP15_2905 0.80 +1.7
3,044,343 + HP15_2905 0.80 +1.0
3,044,343 + HP15_2905 0.80 +3.0
3,044,353 + HP15_2905 0.81 +0.6
3,044,516 + +1.6
3,044,587 + +3.0
3,044,898 + HP15_2906 0.35 -0.1
3,045,018 + +0.5
3,045,111 + +0.3
3,045,123 - +0.3
3,045,166 - HP15_2907 0.11 -1.3
3,045,204 + HP15_2907 0.16 -0.2
3,045,206 + HP15_2907 0.16 +0.1
3,045,206 + HP15_2907 0.16 +0.9
3,045,206 + HP15_2907 0.16 -0.3
3,045,214 + HP15_2907 0.17 +0.2
3,045,220 - HP15_2907 0.18 -0.1
3,045,230 - HP15_2907 0.19 -0.2
3,045,333 - HP15_2907 0.32 +1.6
3,045,359 + HP15_2907 0.35 +1.3
3,045,424 - HP15_2907 0.44 -0.5
3,045,450 + HP15_2907 0.47 -0.1
3,045,452 - HP15_2907 0.47 -0.4
3,045,500 - HP15_2907 0.53 -1.7
3,045,500 - HP15_2907 0.53 +0.2
3,045,500 - HP15_2907 0.53 +1.1
3,045,512 + HP15_2907 0.55 +0.6
3,045,520 - HP15_2907 0.56 -0.5
3,045,536 + HP15_2907 0.58 -1.1
3,045,541 + HP15_2907 0.59 -0.8

Or see this region's nucleotide sequence