Experiment: m.b. 40C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2904 and HP15_2905 are separated by 82 nucleotides HP15_2905 and HP15_2906 are separated by 205 nucleotides HP15_2906 and HP15_2907 are separated by 69 nucleotides
HP15_2904: HP15_2904 - conserved hypothetical protein, at 3,042,236 to 3,043,087
_2904
HP15_2905: HP15_2905 - lipoprotein-like protein, at 3,043,170 to 3,044,630
_2905
HP15_2906: HP15_2906 - conserved hypothetical protein, at 3,044,836 to 3,045,012
_2906
HP15_2907: HP15_2907 - extracellular solute-binding protein, family 3, at 3,045,082 to 3,045,864
_2907
Position (kb)
3043
3044
3045 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3043.243 kb on - strand at 3043.293 kb on - strand at 3043.296 kb on + strand at 3043.303 kb on - strand at 3043.361 kb on + strand, within HP15_2905 at 3043.448 kb on + strand, within HP15_2905 at 3043.550 kb on + strand, within HP15_2905 at 3043.558 kb on - strand, within HP15_2905 at 3043.568 kb on + strand, within HP15_2905 at 3043.607 kb on + strand, within HP15_2905 at 3043.615 kb on - strand, within HP15_2905 at 3043.625 kb on - strand, within HP15_2905 at 3043.721 kb on + strand, within HP15_2905 at 3043.789 kb on + strand, within HP15_2905 at 3043.917 kb on + strand, within HP15_2905 at 3044.027 kb on - strand, within HP15_2905 at 3044.156 kb on + strand, within HP15_2905 at 3044.157 kb on - strand, within HP15_2905 at 3044.157 kb on - strand, within HP15_2905 at 3044.164 kb on + strand, within HP15_2905 at 3044.177 kb on - strand, within HP15_2905 at 3044.231 kb on + strand, within HP15_2905 at 3044.239 kb on - strand, within HP15_2905 at 3044.251 kb on - strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.353 kb on + strand, within HP15_2905 at 3044.516 kb on + strand at 3044.587 kb on + strand at 3044.898 kb on + strand, within HP15_2906 at 3045.018 kb on + strand at 3045.111 kb on + strand at 3045.123 kb on - strand at 3045.166 kb on - strand, within HP15_2907 at 3045.204 kb on + strand, within HP15_2907 at 3045.206 kb on + strand, within HP15_2907 at 3045.206 kb on + strand, within HP15_2907 at 3045.206 kb on + strand, within HP15_2907 at 3045.214 kb on + strand, within HP15_2907 at 3045.220 kb on - strand, within HP15_2907 at 3045.230 kb on - strand, within HP15_2907 at 3045.333 kb on - strand, within HP15_2907 at 3045.359 kb on + strand, within HP15_2907 at 3045.424 kb on - strand, within HP15_2907 at 3045.450 kb on + strand, within HP15_2907 at 3045.452 kb on - strand, within HP15_2907 at 3045.500 kb on - strand, within HP15_2907 at 3045.500 kb on - strand, within HP15_2907 at 3045.500 kb on - strand, within HP15_2907 at 3045.512 kb on + strand, within HP15_2907 at 3045.520 kb on - strand, within HP15_2907 at 3045.536 kb on + strand, within HP15_2907 at 3045.541 kb on + strand, within HP15_2907
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 40C remove 3,043,243 - +0.2 3,043,293 - +1.1 3,043,296 + +2.1 3,043,303 - -0.0 3,043,361 + HP15_2905 0.13 +0.8 3,043,448 + HP15_2905 0.19 +1.0 3,043,550 + HP15_2905 0.26 +1.7 3,043,558 - HP15_2905 0.27 +1.0 3,043,568 + HP15_2905 0.27 +1.9 3,043,607 + HP15_2905 0.30 +2.8 3,043,615 - HP15_2905 0.30 +3.6 3,043,625 - HP15_2905 0.31 -0.2 3,043,721 + HP15_2905 0.38 +1.8 3,043,789 + HP15_2905 0.42 +1.2 3,043,917 + HP15_2905 0.51 +1.9 3,044,027 - HP15_2905 0.59 +1.1 3,044,156 + HP15_2905 0.67 +1.4 3,044,157 - HP15_2905 0.68 +0.8 3,044,157 - HP15_2905 0.68 +2.0 3,044,164 + HP15_2905 0.68 +2.4 3,044,177 - HP15_2905 0.69 +0.3 3,044,231 + HP15_2905 0.73 +1.2 3,044,239 - HP15_2905 0.73 +1.5 3,044,251 - HP15_2905 0.74 +1.2 3,044,343 + HP15_2905 0.80 +2.9 3,044,343 + HP15_2905 0.80 +1.7 3,044,343 + HP15_2905 0.80 +1.0 3,044,343 + HP15_2905 0.80 +3.0 3,044,353 + HP15_2905 0.81 +0.6 3,044,516 + +1.6 3,044,587 + +3.0 3,044,898 + HP15_2906 0.35 -0.1 3,045,018 + +0.5 3,045,111 + +0.3 3,045,123 - +0.3 3,045,166 - HP15_2907 0.11 -1.3 3,045,204 + HP15_2907 0.16 -0.2 3,045,206 + HP15_2907 0.16 +0.1 3,045,206 + HP15_2907 0.16 +0.9 3,045,206 + HP15_2907 0.16 -0.3 3,045,214 + HP15_2907 0.17 +0.2 3,045,220 - HP15_2907 0.18 -0.1 3,045,230 - HP15_2907 0.19 -0.2 3,045,333 - HP15_2907 0.32 +1.6 3,045,359 + HP15_2907 0.35 +1.3 3,045,424 - HP15_2907 0.44 -0.5 3,045,450 + HP15_2907 0.47 -0.1 3,045,452 - HP15_2907 0.47 -0.4 3,045,500 - HP15_2907 0.53 -1.7 3,045,500 - HP15_2907 0.53 +0.2 3,045,500 - HP15_2907 0.53 +1.1 3,045,512 + HP15_2907 0.55 +0.6 3,045,520 - HP15_2907 0.56 -0.5 3,045,536 + HP15_2907 0.58 -1.1 3,045,541 + HP15_2907 0.59 -0.8
Or see this region's nucleotide sequence