Experiment: m.b. 40C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1809 and HP15_1810 are separated by 1 nucleotides HP15_1810 and HP15_1811 are separated by 65 nucleotides HP15_1811 and HP15_1812 are separated by 71 nucleotides
HP15_1809: HP15_1809 - peptide ABC transporter, permease protein, at 1,902,699 to 1,903,727
_1809
HP15_1810: HP15_1810 - peptide ABC transporter, ATP-binding protein, at 1,903,729 to 1,905,333
_1810
HP15_1811: HP15_1811 - short-chain dehydrogenase/reductase SDR, at 1,905,399 to 1,906,184
_1811
HP15_1812: HP15_1812 - type IV pilus assembly PilZ, at 1,906,256 to 1,906,699
_1812
Position (kb)
1903
1904
1905
1906 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1902.833 kb on + strand, within HP15_1809 at 1903.059 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.197 kb on - strand, within HP15_1809 at 1903.255 kb on - strand, within HP15_1809 at 1903.422 kb on + strand, within HP15_1809 at 1903.466 kb on + strand, within HP15_1809 at 1903.527 kb on + strand, within HP15_1809 at 1903.601 kb on + strand, within HP15_1809 at 1903.621 kb on + strand, within HP15_1809 at 1903.729 kb on - strand at 1903.983 kb on - strand, within HP15_1810 at 1904.043 kb on - strand, within HP15_1810 at 1904.043 kb on - strand, within HP15_1810 at 1904.117 kb on + strand, within HP15_1810 at 1904.117 kb on + strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.125 kb on - strand, within HP15_1810 at 1904.310 kb on + strand, within HP15_1810 at 1904.342 kb on - strand, within HP15_1810 at 1904.369 kb on + strand, within HP15_1810 at 1904.464 kb on - strand, within HP15_1810 at 1904.482 kb on - strand, within HP15_1810 at 1904.730 kb on + strand, within HP15_1810 at 1904.766 kb on - strand, within HP15_1810 at 1905.039 kb on - strand, within HP15_1810 at 1905.122 kb on - strand, within HP15_1810 at 1905.122 kb on - strand, within HP15_1810 at 1905.124 kb on + strand, within HP15_1810 at 1905.127 kb on - strand, within HP15_1810 at 1906.262 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 40C remove 1,902,833 + HP15_1809 0.13 -0.2 1,903,059 + HP15_1809 0.35 +3.7 1,903,144 + HP15_1809 0.43 +1.9 1,903,144 + HP15_1809 0.43 +2.2 1,903,152 - HP15_1809 0.44 +3.7 1,903,152 - HP15_1809 0.44 +1.8 1,903,197 - HP15_1809 0.48 +2.0 1,903,255 - HP15_1809 0.54 +2.3 1,903,422 + HP15_1809 0.70 +1.3 1,903,466 + HP15_1809 0.75 +2.1 1,903,527 + HP15_1809 0.80 +2.9 1,903,601 + HP15_1809 0.88 +3.3 1,903,621 + HP15_1809 0.90 +1.7 1,903,729 - +2.1 1,903,983 - HP15_1810 0.16 +1.7 1,904,043 - HP15_1810 0.20 +1.6 1,904,043 - HP15_1810 0.20 +1.4 1,904,117 + HP15_1810 0.24 +3.4 1,904,117 + HP15_1810 0.24 +3.7 1,904,125 - HP15_1810 0.25 +3.5 1,904,125 - HP15_1810 0.25 +3.3 1,904,125 - HP15_1810 0.25 +1.7 1,904,310 + HP15_1810 0.36 +2.2 1,904,342 - HP15_1810 0.38 +1.9 1,904,369 + HP15_1810 0.40 +2.0 1,904,464 - HP15_1810 0.46 +1.9 1,904,482 - HP15_1810 0.47 +1.9 1,904,730 + HP15_1810 0.62 +1.9 1,904,766 - HP15_1810 0.65 +0.3 1,905,039 - HP15_1810 0.82 +3.4 1,905,122 - HP15_1810 0.87 +2.1 1,905,122 - HP15_1810 0.87 +2.6 1,905,124 + HP15_1810 0.87 +1.9 1,905,127 - HP15_1810 0.87 +1.5 1,906,262 - -0.2
Or see this region's nucleotide sequence