Strain Fitness in Marinobacter adhaerens HP15 around HP15_1810

Experiment: m.b. 40C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1809 and HP15_1810 are separated by 1 nucleotidesHP15_1810 and HP15_1811 are separated by 65 nucleotidesHP15_1811 and HP15_1812 are separated by 71 nucleotides HP15_1809: HP15_1809 - peptide ABC transporter, permease protein, at 1,902,699 to 1,903,727 _1809 HP15_1810: HP15_1810 - peptide ABC transporter, ATP-binding protein, at 1,903,729 to 1,905,333 _1810 HP15_1811: HP15_1811 - short-chain dehydrogenase/reductase SDR, at 1,905,399 to 1,906,184 _1811 HP15_1812: HP15_1812 - type IV pilus assembly PilZ, at 1,906,256 to 1,906,699 _1812 Position (kb) 1903 1904 1905 1906Strain fitness (log2 ratio) -1 0 1 2 3at 1902.833 kb on + strand, within HP15_1809at 1903.059 kb on + strand, within HP15_1809at 1903.144 kb on + strand, within HP15_1809at 1903.144 kb on + strand, within HP15_1809at 1903.152 kb on - strand, within HP15_1809at 1903.152 kb on - strand, within HP15_1809at 1903.197 kb on - strand, within HP15_1809at 1903.255 kb on - strand, within HP15_1809at 1903.422 kb on + strand, within HP15_1809at 1903.466 kb on + strand, within HP15_1809at 1903.527 kb on + strand, within HP15_1809at 1903.601 kb on + strand, within HP15_1809at 1903.621 kb on + strand, within HP15_1809at 1903.729 kb on - strandat 1903.983 kb on - strand, within HP15_1810at 1904.043 kb on - strand, within HP15_1810at 1904.043 kb on - strand, within HP15_1810at 1904.117 kb on + strand, within HP15_1810at 1904.117 kb on + strand, within HP15_1810at 1904.125 kb on - strand, within HP15_1810at 1904.125 kb on - strand, within HP15_1810at 1904.125 kb on - strand, within HP15_1810at 1904.310 kb on + strand, within HP15_1810at 1904.342 kb on - strand, within HP15_1810at 1904.369 kb on + strand, within HP15_1810at 1904.464 kb on - strand, within HP15_1810at 1904.482 kb on - strand, within HP15_1810at 1904.730 kb on + strand, within HP15_1810at 1904.766 kb on - strand, within HP15_1810at 1905.039 kb on - strand, within HP15_1810at 1905.122 kb on - strand, within HP15_1810at 1905.122 kb on - strand, within HP15_1810at 1905.124 kb on + strand, within HP15_1810at 1905.127 kb on - strand, within HP15_1810at 1906.262 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 40C
remove
1,902,833 + HP15_1809 0.13 -0.2
1,903,059 + HP15_1809 0.35 +3.7
1,903,144 + HP15_1809 0.43 +1.9
1,903,144 + HP15_1809 0.43 +2.2
1,903,152 - HP15_1809 0.44 +3.7
1,903,152 - HP15_1809 0.44 +1.8
1,903,197 - HP15_1809 0.48 +2.0
1,903,255 - HP15_1809 0.54 +2.3
1,903,422 + HP15_1809 0.70 +1.3
1,903,466 + HP15_1809 0.75 +2.1
1,903,527 + HP15_1809 0.80 +2.9
1,903,601 + HP15_1809 0.88 +3.3
1,903,621 + HP15_1809 0.90 +1.7
1,903,729 - +2.1
1,903,983 - HP15_1810 0.16 +1.7
1,904,043 - HP15_1810 0.20 +1.6
1,904,043 - HP15_1810 0.20 +1.4
1,904,117 + HP15_1810 0.24 +3.4
1,904,117 + HP15_1810 0.24 +3.7
1,904,125 - HP15_1810 0.25 +3.5
1,904,125 - HP15_1810 0.25 +3.3
1,904,125 - HP15_1810 0.25 +1.7
1,904,310 + HP15_1810 0.36 +2.2
1,904,342 - HP15_1810 0.38 +1.9
1,904,369 + HP15_1810 0.40 +2.0
1,904,464 - HP15_1810 0.46 +1.9
1,904,482 - HP15_1810 0.47 +1.9
1,904,730 + HP15_1810 0.62 +1.9
1,904,766 - HP15_1810 0.65 +0.3
1,905,039 - HP15_1810 0.82 +3.4
1,905,122 - HP15_1810 0.87 +2.1
1,905,122 - HP15_1810 0.87 +2.6
1,905,124 + HP15_1810 0.87 +1.9
1,905,127 - HP15_1810 0.87 +1.5
1,906,262 - -0.2

Or see this region's nucleotide sequence