Strain Fitness in Marinobacter adhaerens HP15 around HP15_1808

Experiment: m.b. 40C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1807 and HP15_1808 are separated by 15 nucleotidesHP15_1808 and HP15_1809 overlap by 4 nucleotides HP15_1807: HP15_1807 - peptide ABC transporter, periplasmic peptide-binding protein, at 1,899,778 to 1,901,601 _1807 HP15_1808: HP15_1808 - peptide ABC transporter, permease protein, at 1,901,617 to 1,902,702 _1808 HP15_1809: HP15_1809 - peptide ABC transporter, permease protein, at 1,902,699 to 1,903,727 _1809 Position (kb) 1901 1902 1903Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1900.809 kb on + strand, within HP15_1807at 1900.937 kb on + strand, within HP15_1807at 1901.049 kb on - strand, within HP15_1807at 1901.052 kb on + strand, within HP15_1807at 1901.060 kb on - strand, within HP15_1807at 1901.311 kb on - strand, within HP15_1807at 1901.657 kb on - strandat 1901.725 kb on - strandat 1902.019 kb on - strand, within HP15_1808at 1902.019 kb on - strand, within HP15_1808at 1902.108 kb on - strand, within HP15_1808at 1902.331 kb on - strand, within HP15_1808at 1902.458 kb on - strand, within HP15_1808at 1902.497 kb on - strand, within HP15_1808at 1902.544 kb on - strand, within HP15_1808at 1902.552 kb on - strand, within HP15_1808at 1902.562 kb on + strand, within HP15_1808at 1902.570 kb on - strand, within HP15_1808at 1902.628 kb on - strandat 1902.833 kb on + strand, within HP15_1809at 1903.059 kb on + strand, within HP15_1809at 1903.144 kb on + strand, within HP15_1809at 1903.144 kb on + strand, within HP15_1809at 1903.152 kb on - strand, within HP15_1809at 1903.152 kb on - strand, within HP15_1809at 1903.197 kb on - strand, within HP15_1809at 1903.255 kb on - strand, within HP15_1809at 1903.422 kb on + strand, within HP15_1809at 1903.466 kb on + strand, within HP15_1809at 1903.527 kb on + strand, within HP15_1809at 1903.601 kb on + strand, within HP15_1809at 1903.621 kb on + strand, within HP15_1809

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 40C
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1,900,809 + HP15_1807 0.57 +3.4
1,900,937 + HP15_1807 0.64 +5.1
1,901,049 - HP15_1807 0.70 +3.1
1,901,052 + HP15_1807 0.70 +2.2
1,901,060 - HP15_1807 0.70 +2.1
1,901,311 - HP15_1807 0.84 +4.2
1,901,657 - +1.7
1,901,725 - +2.0
1,902,019 - HP15_1808 0.37 +3.9
1,902,019 - HP15_1808 0.37 +0.8
1,902,108 - HP15_1808 0.45 +2.5
1,902,331 - HP15_1808 0.66 +3.4
1,902,458 - HP15_1808 0.77 +3.4
1,902,497 - HP15_1808 0.81 +2.4
1,902,544 - HP15_1808 0.85 +2.1
1,902,552 - HP15_1808 0.86 +2.3
1,902,562 + HP15_1808 0.87 +2.0
1,902,570 - HP15_1808 0.88 +1.5
1,902,628 - +2.0
1,902,833 + HP15_1809 0.13 -0.2
1,903,059 + HP15_1809 0.35 +3.7
1,903,144 + HP15_1809 0.43 +1.9
1,903,144 + HP15_1809 0.43 +2.2
1,903,152 - HP15_1809 0.44 +3.7
1,903,152 - HP15_1809 0.44 +1.8
1,903,197 - HP15_1809 0.48 +2.0
1,903,255 - HP15_1809 0.54 +2.3
1,903,422 + HP15_1809 0.70 +1.3
1,903,466 + HP15_1809 0.75 +2.1
1,903,527 + HP15_1809 0.80 +2.9
1,903,601 + HP15_1809 0.88 +3.3
1,903,621 + HP15_1809 0.90 +1.7

Or see this region's nucleotide sequence