Experiment: m.b. 40C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1807 and HP15_1808 are separated by 15 nucleotides HP15_1808 and HP15_1809 overlap by 4 nucleotides
HP15_1807: HP15_1807 - peptide ABC transporter, periplasmic peptide-binding protein, at 1,899,778 to 1,901,601
_1807
HP15_1808: HP15_1808 - peptide ABC transporter, permease protein, at 1,901,617 to 1,902,702
_1808
HP15_1809: HP15_1809 - peptide ABC transporter, permease protein, at 1,902,699 to 1,903,727
_1809
Position (kb)
1901
1902
1903 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 1900.809 kb on + strand, within HP15_1807 at 1900.937 kb on + strand, within HP15_1807 at 1901.049 kb on - strand, within HP15_1807 at 1901.052 kb on + strand, within HP15_1807 at 1901.060 kb on - strand, within HP15_1807 at 1901.311 kb on - strand, within HP15_1807 at 1901.657 kb on - strand at 1901.725 kb on - strand at 1902.019 kb on - strand, within HP15_1808 at 1902.019 kb on - strand, within HP15_1808 at 1902.108 kb on - strand, within HP15_1808 at 1902.331 kb on - strand, within HP15_1808 at 1902.458 kb on - strand, within HP15_1808 at 1902.497 kb on - strand, within HP15_1808 at 1902.544 kb on - strand, within HP15_1808 at 1902.552 kb on - strand, within HP15_1808 at 1902.562 kb on + strand, within HP15_1808 at 1902.570 kb on - strand, within HP15_1808 at 1902.628 kb on - strand at 1902.833 kb on + strand, within HP15_1809 at 1903.059 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.144 kb on + strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.152 kb on - strand, within HP15_1809 at 1903.197 kb on - strand, within HP15_1809 at 1903.255 kb on - strand, within HP15_1809 at 1903.422 kb on + strand, within HP15_1809 at 1903.466 kb on + strand, within HP15_1809 at 1903.527 kb on + strand, within HP15_1809 at 1903.601 kb on + strand, within HP15_1809 at 1903.621 kb on + strand, within HP15_1809
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 40C remove 1,900,809 + HP15_1807 0.57 +3.4 1,900,937 + HP15_1807 0.64 +5.1 1,901,049 - HP15_1807 0.70 +3.1 1,901,052 + HP15_1807 0.70 +2.2 1,901,060 - HP15_1807 0.70 +2.1 1,901,311 - HP15_1807 0.84 +4.2 1,901,657 - +1.7 1,901,725 - +2.0 1,902,019 - HP15_1808 0.37 +3.9 1,902,019 - HP15_1808 0.37 +0.8 1,902,108 - HP15_1808 0.45 +2.5 1,902,331 - HP15_1808 0.66 +3.4 1,902,458 - HP15_1808 0.77 +3.4 1,902,497 - HP15_1808 0.81 +2.4 1,902,544 - HP15_1808 0.85 +2.1 1,902,552 - HP15_1808 0.86 +2.3 1,902,562 + HP15_1808 0.87 +2.0 1,902,570 - HP15_1808 0.88 +1.5 1,902,628 - +2.0 1,902,833 + HP15_1809 0.13 -0.2 1,903,059 + HP15_1809 0.35 +3.7 1,903,144 + HP15_1809 0.43 +1.9 1,903,144 + HP15_1809 0.43 +2.2 1,903,152 - HP15_1809 0.44 +3.7 1,903,152 - HP15_1809 0.44 +1.8 1,903,197 - HP15_1809 0.48 +2.0 1,903,255 - HP15_1809 0.54 +2.3 1,903,422 + HP15_1809 0.70 +1.3 1,903,466 + HP15_1809 0.75 +2.1 1,903,527 + HP15_1809 0.80 +2.9 1,903,601 + HP15_1809 0.88 +3.3 1,903,621 + HP15_1809 0.90 +1.7
Or see this region's nucleotide sequence