Experiment: m.b. 40C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1806 and HP15_1807 are separated by 12 nucleotides HP15_1807 and HP15_1808 are separated by 15 nucleotides
HP15_1806: HP15_1806 - membrane-bound lytic murein transglycosylase D precursor, at 1,898,065 to 1,899,765
_1806
HP15_1807: HP15_1807 - peptide ABC transporter, periplasmic peptide-binding protein, at 1,899,778 to 1,901,601
_1807
HP15_1808: HP15_1808 - peptide ABC transporter, permease protein, at 1,901,617 to 1,902,702
_1808
Position (kb)
1899
1900
1901
1902 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1899.258 kb on + strand, within HP15_1806 at 1899.335 kb on + strand, within HP15_1806 at 1899.404 kb on + strand, within HP15_1806 at 1899.422 kb on - strand, within HP15_1806 at 1899.560 kb on - strand, within HP15_1806 at 1899.699 kb on - strand at 1899.804 kb on - strand at 1899.821 kb on - strand at 1899.832 kb on - strand at 1900.076 kb on - strand, within HP15_1807 at 1900.304 kb on + strand, within HP15_1807 at 1900.409 kb on - strand, within HP15_1807 at 1900.476 kb on + strand, within HP15_1807 at 1900.484 kb on - strand, within HP15_1807 at 1900.562 kb on - strand, within HP15_1807 at 1900.577 kb on - strand, within HP15_1807 at 1900.614 kb on + strand, within HP15_1807 at 1900.809 kb on + strand, within HP15_1807 at 1900.937 kb on + strand, within HP15_1807 at 1901.049 kb on - strand, within HP15_1807 at 1901.052 kb on + strand, within HP15_1807 at 1901.060 kb on - strand, within HP15_1807 at 1901.311 kb on - strand, within HP15_1807 at 1901.657 kb on - strand at 1901.725 kb on - strand at 1902.019 kb on - strand, within HP15_1808 at 1902.019 kb on - strand, within HP15_1808 at 1902.108 kb on - strand, within HP15_1808 at 1902.331 kb on - strand, within HP15_1808 at 1902.458 kb on - strand, within HP15_1808 at 1902.497 kb on - strand, within HP15_1808 at 1902.544 kb on - strand, within HP15_1808 at 1902.552 kb on - strand, within HP15_1808 at 1902.562 kb on + strand, within HP15_1808 at 1902.570 kb on - strand, within HP15_1808
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 40C remove 1,899,258 + HP15_1806 0.70 -4.7 1,899,335 + HP15_1806 0.75 +1.2 1,899,404 + HP15_1806 0.79 -2.4 1,899,422 - HP15_1806 0.80 -1.4 1,899,560 - HP15_1806 0.88 +1.3 1,899,699 - +0.7 1,899,804 - +1.9 1,899,821 - +0.2 1,899,832 - +3.4 1,900,076 - HP15_1807 0.16 +2.0 1,900,304 + HP15_1807 0.29 +3.5 1,900,409 - HP15_1807 0.35 +1.8 1,900,476 + HP15_1807 0.38 +2.5 1,900,484 - HP15_1807 0.39 +1.3 1,900,562 - HP15_1807 0.43 +0.6 1,900,577 - HP15_1807 0.44 +1.7 1,900,614 + HP15_1807 0.46 +2.2 1,900,809 + HP15_1807 0.57 +3.4 1,900,937 + HP15_1807 0.64 +5.1 1,901,049 - HP15_1807 0.70 +3.1 1,901,052 + HP15_1807 0.70 +2.2 1,901,060 - HP15_1807 0.70 +2.1 1,901,311 - HP15_1807 0.84 +4.2 1,901,657 - +1.7 1,901,725 - +2.0 1,902,019 - HP15_1808 0.37 +3.9 1,902,019 - HP15_1808 0.37 +0.8 1,902,108 - HP15_1808 0.45 +2.5 1,902,331 - HP15_1808 0.66 +3.4 1,902,458 - HP15_1808 0.77 +3.4 1,902,497 - HP15_1808 0.81 +2.4 1,902,544 - HP15_1808 0.85 +2.1 1,902,552 - HP15_1808 0.86 +2.3 1,902,562 + HP15_1808 0.87 +2.0 1,902,570 - HP15_1808 0.88 +1.5
Or see this region's nucleotide sequence