Experiment: m.b. 40C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1380 and HP15_1381 are separated by 107 nucleotides HP15_1381 and HP15_1382 are separated by 61 nucleotides HP15_1382 and HP15_tRNA26 are separated by 56 nucleotides HP15_tRNA26 and HP15_1383 are separated by 114 nucleotides
HP15_1380: HP15_1380 - conserved hypothetical protein, secreted, at 1,455,510 to 1,456,118
_1380
HP15_1381: HP15_1381 - conserved hypothetical protein, at 1,456,226 to 1,456,711
_1381
HP15_1382: HP15_1382 - M18-family aminopeptidase 2, at 1,456,773 to 1,458,122
_1382
HP15_tRNA26: HP15_tRNA26 - tRNA-Asn, at 1,458,179 to 1,458,254
_tRNA26
HP15_1383: HP15_1383 - AB-hydrolase YheT, putative, at 1,458,369 to 1,459,292
_1383
Position (kb)
1456
1457
1458
1459 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1455.792 kb on + strand, within HP15_1380 at 1455.792 kb on + strand, within HP15_1380 at 1455.800 kb on - strand, within HP15_1380 at 1455.800 kb on - strand, within HP15_1380 at 1455.846 kb on + strand, within HP15_1380 at 1455.847 kb on - strand, within HP15_1380 at 1456.044 kb on - strand, within HP15_1380 at 1456.089 kb on + strand at 1456.097 kb on - strand at 1456.108 kb on + strand at 1456.116 kb on - strand at 1456.199 kb on - strand at 1456.238 kb on + strand at 1456.251 kb on - strand at 1456.771 kb on + strand at 1456.779 kb on - strand at 1456.845 kb on + strand at 1457.164 kb on + strand, within HP15_1382 at 1457.457 kb on + strand, within HP15_1382 at 1457.464 kb on - strand, within HP15_1382 at 1457.465 kb on - strand, within HP15_1382 at 1457.625 kb on + strand, within HP15_1382 at 1457.693 kb on - strand, within HP15_1382 at 1457.717 kb on - strand, within HP15_1382 at 1457.831 kb on + strand, within HP15_1382 at 1457.831 kb on + strand, within HP15_1382 at 1458.013 kb on - strand at 1458.393 kb on + strand at 1458.482 kb on - strand, within HP15_1383 at 1458.630 kb on + strand, within HP15_1383 at 1458.697 kb on - strand, within HP15_1383 at 1458.754 kb on + strand, within HP15_1383 at 1459.066 kb on - strand, within HP15_1383 at 1459.068 kb on - strand, within HP15_1383
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 40C remove 1,455,792 + HP15_1380 0.46 +0.6 1,455,792 + HP15_1380 0.46 -0.1 1,455,800 - HP15_1380 0.48 +0.9 1,455,800 - HP15_1380 0.48 -0.2 1,455,846 + HP15_1380 0.55 -0.2 1,455,847 - HP15_1380 0.55 +0.7 1,456,044 - HP15_1380 0.88 +1.1 1,456,089 + -0.2 1,456,097 - +0.2 1,456,108 + -1.5 1,456,116 - -0.3 1,456,199 - -0.1 1,456,238 + -2.6 1,456,251 - -1.9 1,456,771 + +1.0 1,456,779 - +0.6 1,456,845 + -0.6 1,457,164 + HP15_1382 0.29 -1.1 1,457,457 + HP15_1382 0.51 -1.9 1,457,464 - HP15_1382 0.51 -3.6 1,457,465 - HP15_1382 0.51 -2.9 1,457,625 + HP15_1382 0.63 +0.7 1,457,693 - HP15_1382 0.68 +0.7 1,457,717 - HP15_1382 0.70 -1.5 1,457,831 + HP15_1382 0.78 -2.1 1,457,831 + HP15_1382 0.78 -0.6 1,458,013 - -2.6 1,458,393 + -0.7 1,458,482 - HP15_1383 0.12 +0.4 1,458,630 + HP15_1383 0.28 -0.6 1,458,697 - HP15_1383 0.35 +0.1 1,458,754 + HP15_1383 0.42 +0.2 1,459,066 - HP15_1383 0.75 -0.7 1,459,068 - HP15_1383 0.76 -0.7
Or see this region's nucleotide sequence