Strain Fitness in Shewanella oneidensis MR-1 around SO_r009

Experiment: ShewMM_MES_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSp23SA and Sp5SA are separated by 203 nucleotidesSp5SA and cinA are separated by 389 nucleotides SO_r008: Sp23SA - 23S ribosomal RNA (RefSeq), at 271,658 to 274,551 Sp23SA SO_r009: Sp5SA - 5S ribosomal RNA (RefSeq), at 274,755 to 274,874 Sp5SA SO0272: cinA - competence/damage-inducible protein CinA (NCBI ptt file), at 275,264 to 276,538 cinA Position (kb) 274 275Strain fitness (log2 ratio) -1 0 1at 275.104 kb on + strandat 275.173 kb on + strandat 275.173 kb on + strandat 275.181 kb on - strandat 275.181 kb on - strandat 275.192 kb on - strandat 275.209 kb on + strandat 275.512 kb on + strand, within cinAat 275.512 kb on + strand, within cinAat 275.514 kb on - strand, within cinAat 275.678 kb on - strand, within cinAat 275.684 kb on - strand, within cinAat 275.704 kb on + strand, within cinAat 275.784 kb on - strand, within cinAat 275.835 kb on - strand, within cinA

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Per-strain Table

Position Strand Gene LocusTag Fraction ShewMM_MES_buffer
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275,104 + +0.1
275,173 + +0.4
275,173 + +0.1
275,181 - +0.5
275,181 - -0.6
275,192 - +0.1
275,209 + +1.2
275,512 + cinA SO0272 0.19 -0.7
275,512 + cinA SO0272 0.19 +0.5
275,514 - cinA SO0272 0.20 -0.1
275,678 - cinA SO0272 0.32 +0.1
275,684 - cinA SO0272 0.33 +1.5
275,704 + cinA SO0272 0.35 +0.3
275,784 - cinA SO0272 0.41 -0.3
275,835 - cinA SO0272 0.45 -0.2

Or see this region's nucleotide sequence