Strain Fitness in Shewanella oneidensis MR-1 around SO3731

Experiment: ShewMM_MES_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3729 and SO_3730 are separated by 144 nucleotidesSO_3730 and SO3731 are separated by 174 nucleotidesSO3731 and SO3733 are separated by 175 nucleotides SO3729: SO3729 - hypothetical phospholipase A (NCBI ptt file), at 3,873,061 to 3,873,210 SO3729 SO_3730: SO_3730 - no description, at 3,873,355 to 3,874,017 _3730 SO3731: SO3731 - hypothetical protein (NCBI ptt file), at 3,874,192 to 3,875,739 SO3731 SO3733: SO3733 - hypothetical protein (NCBI ptt file), at 3,875,915 to 3,877,651 SO3733 Position (kb) 3874 3875 3876Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3873.203 kb on - strandat 3873.224 kb on + strandat 3873.224 kb on + strandat 3873.248 kb on + strandat 3873.253 kb on + strandat 3873.261 kb on - strandat 3873.261 kb on - strandat 3873.261 kb on - strandat 3873.405 kb on - strandat 3873.448 kb on + strand, within SO_3730at 3873.523 kb on + strand, within SO_3730at 3873.531 kb on - strand, within SO_3730at 3873.599 kb on - strand, within SO_3730at 3873.599 kb on - strand, within SO_3730at 3873.752 kb on + strand, within SO_3730at 3873.824 kb on - strand, within SO_3730at 3873.968 kb on + strandat 3874.160 kb on + strandat 3874.160 kb on - strandat 3874.168 kb on - strandat 3874.168 kb on - strandat 3874.213 kb on - strandat 3874.416 kb on + strand, within SO3731at 3874.416 kb on + strand, within SO3731at 3874.416 kb on + strand, within SO3731at 3874.424 kb on - strand, within SO3731at 3874.424 kb on - strand, within SO3731at 3874.424 kb on - strand, within SO3731at 3874.631 kb on + strand, within SO3731at 3874.656 kb on - strand, within SO3731at 3874.677 kb on + strand, within SO3731at 3874.817 kb on + strand, within SO3731at 3874.817 kb on + strand, within SO3731at 3874.829 kb on + strand, within SO3731at 3874.839 kb on + strand, within SO3731at 3874.839 kb on + strand, within SO3731at 3874.841 kb on - strand, within SO3731at 3874.861 kb on + strand, within SO3731at 3874.869 kb on - strand, within SO3731at 3874.893 kb on - strand, within SO3731at 3875.034 kb on + strand, within SO3731at 3875.046 kb on + strand, within SO3731at 3875.053 kb on + strand, within SO3731at 3875.053 kb on + strand, within SO3731at 3875.053 kb on + strand, within SO3731at 3875.053 kb on + strand, within SO3731at 3875.061 kb on - strand, within SO3731at 3875.062 kb on - strand, within SO3731at 3875.062 kb on - strand, within SO3731at 3875.213 kb on + strand, within SO3731at 3875.213 kb on + strand, within SO3731at 3875.213 kb on + strand, within SO3731at 3875.221 kb on - strand, within SO3731at 3875.221 kb on - strand, within SO3731at 3875.258 kb on + strand, within SO3731at 3875.258 kb on + strand, within SO3731at 3875.362 kb on + strand, within SO3731at 3875.534 kb on - strand, within SO3731at 3875.558 kb on + strand, within SO3731at 3875.664 kb on - strandat 3875.690 kb on - strandat 3875.729 kb on + strandat 3875.813 kb on - strandat 3875.951 kb on + strandat 3876.036 kb on - strandat 3876.062 kb on + strandat 3876.062 kb on + strandat 3876.163 kb on - strand, within SO3733at 3876.191 kb on - strand, within SO3733at 3876.247 kb on - strand, within SO3733at 3876.247 kb on - strand, within SO3733at 3876.265 kb on + strand, within SO3733at 3876.282 kb on + strand, within SO3733at 3876.306 kb on - strand, within SO3733at 3876.362 kb on - strand, within SO3733at 3876.375 kb on - strand, within SO3733at 3876.425 kb on + strand, within SO3733at 3876.446 kb on - strand, within SO3733at 3876.504 kb on + strand, within SO3733at 3876.538 kb on - strand, within SO3733at 3876.538 kb on - strand, within SO3733at 3876.545 kb on + strand, within SO3733at 3876.626 kb on + strand, within SO3733at 3876.645 kb on + strand, within SO3733at 3876.649 kb on - strand, within SO3733at 3876.657 kb on - strand, within SO3733

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Per-strain Table

Position Strand Gene LocusTag Fraction ShewMM_MES_buffer
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3,873,203 - -1.1
3,873,224 + +1.4
3,873,224 + -0.1
3,873,248 + +0.0
3,873,253 + +2.2
3,873,261 - +0.2
3,873,261 - -0.4
3,873,261 - -0.0
3,873,405 - +0.2
3,873,448 + SO_3730 0.14 -0.1
3,873,523 + SO_3730 0.25 -0.2
3,873,531 - SO_3730 0.27 -0.1
3,873,599 - SO_3730 0.37 +0.2
3,873,599 - SO_3730 0.37 +0.3
3,873,752 + SO_3730 0.60 -0.5
3,873,824 - SO_3730 0.71 +0.5
3,873,968 + -0.4
3,874,160 + +0.3
3,874,160 - +0.4
3,874,168 - +0.8
3,874,168 - +0.4
3,874,213 - -0.5
3,874,416 + SO3731 0.14 +0.0
3,874,416 + SO3731 0.14 -0.2
3,874,416 + SO3731 0.14 -0.9
3,874,424 - SO3731 0.15 -0.6
3,874,424 - SO3731 0.15 -0.1
3,874,424 - SO3731 0.15 -0.4
3,874,631 + SO3731 0.28 -0.4
3,874,656 - SO3731 0.30 +0.3
3,874,677 + SO3731 0.31 +0.4
3,874,817 + SO3731 0.40 +0.3
3,874,817 + SO3731 0.40 -1.0
3,874,829 + SO3731 0.41 -0.2
3,874,839 + SO3731 0.42 +1.2
3,874,839 + SO3731 0.42 -0.8
3,874,841 - SO3731 0.42 +1.1
3,874,861 + SO3731 0.43 -0.4
3,874,869 - SO3731 0.44 +0.4
3,874,893 - SO3731 0.45 +0.2
3,875,034 + SO3731 0.54 -0.6
3,875,046 + SO3731 0.55 +0.0
3,875,053 + SO3731 0.56 +0.3
3,875,053 + SO3731 0.56 -0.6
3,875,053 + SO3731 0.56 +0.8
3,875,053 + SO3731 0.56 -2.1
3,875,061 - SO3731 0.56 +0.4
3,875,062 - SO3731 0.56 +0.8
3,875,062 - SO3731 0.56 +1.0
3,875,213 + SO3731 0.66 +0.1
3,875,213 + SO3731 0.66 -0.3
3,875,213 + SO3731 0.66 -0.0
3,875,221 - SO3731 0.66 +0.1
3,875,221 - SO3731 0.66 +0.9
3,875,258 + SO3731 0.69 +0.5
3,875,258 + SO3731 0.69 +0.6
3,875,362 + SO3731 0.76 +1.2
3,875,534 - SO3731 0.87 -0.4
3,875,558 + SO3731 0.88 -0.3
3,875,664 - -0.1
3,875,690 - +0.5
3,875,729 + +0.1
3,875,813 - -0.1
3,875,951 + -0.0
3,876,036 - +0.7
3,876,062 + +0.5
3,876,062 + +0.5
3,876,163 - SO3733 0.14 +0.9
3,876,191 - SO3733 0.16 -0.6
3,876,247 - SO3733 0.19 -2.9
3,876,247 - SO3733 0.19 -0.2
3,876,265 + SO3733 0.20 -0.4
3,876,282 + SO3733 0.21 +0.9
3,876,306 - SO3733 0.23 -0.1
3,876,362 - SO3733 0.26 +0.3
3,876,375 - SO3733 0.26 +0.4
3,876,425 + SO3733 0.29 +0.0
3,876,446 - SO3733 0.31 +0.8
3,876,504 + SO3733 0.34 +0.3
3,876,538 - SO3733 0.36 +0.2
3,876,538 - SO3733 0.36 -0.6
3,876,545 + SO3733 0.36 +0.2
3,876,626 + SO3733 0.41 +0.0
3,876,645 + SO3733 0.42 +0.2
3,876,649 - SO3733 0.42 -0.3
3,876,657 - SO3733 0.43 -0.3

Or see this region's nucleotide sequence