Strain Fitness in Shewanella oneidensis MR-1

Strain Fitness in Shewanella oneidensis MR-1 around SO3184

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	ShewMM_MES_buffer
				remove
3,321,842	+			-2.2
3,321,847	-			-0.7
3,321,850	-			-2.1
3,321,903	-	SO3183	0.12	-1.6
3,321,951	+	SO3183	0.17	-1.9
3,321,951	+	SO3183	0.17	+0.1
3,321,951	+	SO3183	0.17	-0.9
3,321,951	+	SO3183	0.17	+0.1
3,321,951	+	SO3183	0.17	-1.4
3,321,951	+	SO3183	0.17	-1.0
3,321,951	+	SO3183	0.17	-3.5
3,321,951	+	SO3183	0.17	-1.5
3,321,951	+	SO3183	0.17	-2.6
3,321,951	+	SO3183	0.17	-1.2
3,321,951	-	SO3183	0.17	-0.6
3,321,953	+	SO3183	0.17	-2.0
3,321,953	+	SO3183	0.17	-2.0
3,321,956	-	SO3183	0.17	-3.9
3,321,956	-	SO3183	0.17	+0.1
3,321,959	-	SO3183	0.18	-2.5
3,321,959	-	SO3183	0.18	-3.2
3,321,959	-	SO3183	0.18	-0.7
3,321,959	-	SO3183	0.18	-3.9
3,321,959	-	SO3183	0.18	-1.2
3,321,959	-	SO3183	0.18	-1.3
3,321,959	-	SO3183	0.18	-1.7
3,321,959	-	SO3183	0.18	-2.0
3,321,959	-	SO3183	0.18	-2.2
3,321,959	-	SO3183	0.18	-1.9
3,321,959	-	SO3183	0.18	-0.2
3,321,959	-	SO3183	0.18	+1.5
3,321,961	+	SO3183	0.18	-3.6
3,321,961	-	SO3183	0.18	-1.3
3,321,961	-	SO3183	0.18	-1.6
3,321,961	-	SO3183	0.18	-0.8
3,321,961	-	SO3183	0.18	-0.6
3,321,961	-	SO3183	0.18	-2.4
3,321,961	-	SO3183	0.18	-2.1
3,321,961	-	SO3183	0.18	-2.4
3,321,961	-	SO3183	0.18	-0.6
3,321,961	-	SO3183	0.18	-1.4
3,321,961	-	SO3183	0.18	-0.9
3,321,961	-	SO3183	0.18	-1.9
3,321,967	-	SO3183	0.19	-1.9
3,321,967	-	SO3183	0.19	-1.8
3,321,969	-	SO3183	0.19	-1.3
3,321,969	-	SO3183	0.19	-2.1
3,321,969	-	SO3183	0.19	-1.2
3,322,051	+	SO3183	0.27	-3.3
3,322,059	-	SO3183	0.28	-0.9
3,322,059	-	SO3183	0.28	-3.0
3,322,059	-	SO3183	0.28	-3.7
3,322,108	-	SO3183	0.33	-2.9
3,322,140	-	SO3183	0.37	-1.2
3,322,140	-	SO3183	0.37	-0.7
3,322,190	-	SO3183	0.42	-3.2
3,322,213	+	SO3183	0.44	-2.4
3,322,216	-	SO3183	0.45	-0.9
3,322,216	-	SO3183	0.45	-0.7
3,322,218	+	SO3183	0.45	+0.1
3,322,218	+	SO3183	0.45	-0.6
3,322,218	+	SO3183	0.45	-0.9
3,322,218	+	SO3183	0.45	-2.9
3,322,226	-	SO3183	0.46	-2.5
3,322,226	-	SO3183	0.46	-0.5
3,322,226	-	SO3183	0.46	-0.9
3,322,226	-	SO3183	0.46	-2.7
3,322,226	-	SO3183	0.46	-1.5
3,322,226	-	SO3183	0.46	-2.4
3,322,226	-	SO3183	0.46	-2.1
3,322,226	-	SO3183	0.46	-1.9
3,322,226	-	SO3183	0.46	-0.9
3,322,226	-	SO3183	0.46	-0.6
3,322,226	-	SO3183	0.46	-2.7
3,322,226	-	SO3183	0.46	-1.7
3,322,226	-	SO3183	0.46	-2.5
3,322,226	-	SO3183	0.46	-1.2
3,322,226	-	SO3183	0.46	-0.4
3,322,226	-	SO3183	0.46	-2.0
3,322,226	-	SO3183	0.46	-1.0
3,322,226	-	SO3183	0.46	-2.8
3,322,295	+	SO3183	0.53	-1.6
3,322,303	-	SO3183	0.54	-0.9
3,322,303	-	SO3183	0.54	-3.7
3,322,351	+	SO3183	0.59	-1.9
3,322,352	+	SO3183	0.59	-2.6
3,322,366	-	SO3183	0.60	-1.1
3,322,366	-	SO3183	0.60	-1.7
3,322,377	-	SO3183	0.62	-2.4
3,322,408	-	SO3183	0.65	-1.9
3,322,429	-	SO3183	0.67	-2.0
3,322,575	-	SO3183	0.82	-1.1
3,322,577	-	SO3183	0.83	+1.7
3,322,671	-			-0.4
3,322,671	-			-1.4
3,322,715	-			+0.1
3,322,717	+			-1.9
3,322,717	+			-0.5
3,322,717	+			-1.2
3,322,718	+			-1.7
3,322,718	+			-2.1
3,322,725	-			-1.4
3,322,726	-			-3.0
3,322,741	-			-1.2
3,322,776	+			-1.7
3,322,776	+			-1.7
3,322,776	+			-1.0
3,322,784	-			-0.3
3,322,784	-			+0.0
3,322,784	-			+0.8
3,322,784	-			-0.6
3,322,784	-			+0.0
3,322,784	-			+1.2
3,322,811	+			-3.4
3,322,830	+	SO3184	0.11	-1.9
3,322,835	+	SO3184	0.12	-0.7
3,322,838	-	SO3184	0.12	-2.8
3,322,843	-	SO3184	0.13	-3.4
3,322,857	+	SO3184	0.15	-2.9
3,322,865	-	SO3184	0.16	-1.5
3,322,867	+	SO3184	0.16	-0.2
3,322,867	-	SO3184	0.16	-3.2
3,322,911	-	SO3184	0.23	-0.7
3,322,959	+	SO3184	0.29	-2.7
3,322,967	-	SO3184	0.30	-1.0
3,322,968	-	SO3184	0.30	-1.4
3,322,968	-	SO3184	0.30	-3.3
3,322,973	+	SO3184	0.31	-2.3
3,322,973	+	SO3184	0.31	-2.1
3,322,980	+	SO3184	0.32	-1.7
3,322,981	-	SO3184	0.32	-2.5
3,322,981	-	SO3184	0.32	-2.7
3,322,981	-	SO3184	0.32	+0.8
3,322,986	-	SO3184	0.33	-1.9
3,323,019	+	SO3184	0.37	-3.6
3,323,019	+	SO3184	0.37	-2.5
3,323,019	+	SO3184	0.37	-0.4
3,323,019	+	SO3184	0.37	-1.6
3,323,019	+	SO3184	0.37	-0.7
3,323,019	+	SO3184	0.37	-1.0
3,323,019	+	SO3184	0.37	-2.2
3,323,019	+	SO3184	0.37	-3.1
3,323,019	+	SO3184	0.37	-2.5
3,323,019	+	SO3184	0.37	-0.3
3,323,019	+	SO3184	0.37	-1.0
3,323,019	+	SO3184	0.37	-2.4
3,323,019	+	SO3184	0.37	-1.7
3,323,019	+	SO3184	0.37	-3.4
3,323,019	+	SO3184	0.37	-4.0
3,323,019	+	SO3184	0.37	-1.2
3,323,019	+	SO3184	0.37	-1.5
3,323,019	+	SO3184	0.37	-2.4
3,323,019	+	SO3184	0.37	+0.1
3,323,019	+	SO3184	0.37	-1.4
3,323,019	+	SO3184	0.37	-2.4
3,323,019	+	SO3184	0.37	-2.2
3,323,019	+	SO3184	0.37	-1.2
3,323,019	+	SO3184	0.37	-2.4
3,323,019	+	SO3184	0.37	-2.9
3,323,019	+	SO3184	0.37	-1.1
3,323,019	+	SO3184	0.37	-0.5
3,323,019	+	SO3184	0.37	-2.3
3,323,019	+	SO3184	0.37	-2.5
3,323,019	+	SO3184	0.37	-1.7
3,323,019	+	SO3184	0.37	-1.3
3,323,019	+	SO3184	0.37	-3.4
3,323,019	+	SO3184	0.37	-0.5
3,323,019	+	SO3184	0.37	+0.3
3,323,019	+	SO3184	0.37	-3.4
3,323,019	+	SO3184	0.37	-1.3
3,323,019	+	SO3184	0.37	-2.1
3,323,021	-	SO3184	0.38	-2.0
3,323,027	-	SO3184	0.39	-0.7
3,323,027	-	SO3184	0.39	-2.6
3,323,027	-	SO3184	0.39	-2.4
3,323,027	-	SO3184	0.39	-3.4
3,323,027	-	SO3184	0.39	-2.1
3,323,027	-	SO3184	0.39	-2.1
3,323,027	-	SO3184	0.39	-1.5
3,323,027	-	SO3184	0.39	-1.5
3,323,027	-	SO3184	0.39	+0.1
3,323,027	-	SO3184	0.39	-2.6
3,323,027	-	SO3184	0.39	-1.6
3,323,027	-	SO3184	0.39	-1.8
3,323,027	-	SO3184	0.39	-2.2
3,323,027	-	SO3184	0.39	-1.9
3,323,027	-	SO3184	0.39	-3.2
3,323,027	-	SO3184	0.39	-1.7
3,323,027	-	SO3184	0.39	-0.9
3,323,027	-	SO3184	0.39	-1.6
3,323,027	-	SO3184	0.39	-1.9
3,323,027	-	SO3184	0.39	-2.5
3,323,027	-	SO3184	0.39	-2.3
3,323,027	-	SO3184	0.39	-2.1
3,323,027	-	SO3184	0.39	-2.4
3,323,027	-	SO3184	0.39	-0.5
3,323,027	-	SO3184	0.39	-3.6
3,323,027	-	SO3184	0.39	-2.2
3,323,027	-	SO3184	0.39	-1.9
3,323,027	-	SO3184	0.39	-2.6
3,323,027	-	SO3184	0.39	-2.1
3,323,027	-	SO3184	0.39	-1.7
3,323,027	-	SO3184	0.39	-2.5
3,323,027	-	SO3184	0.39	-2.8
3,323,027	-	SO3184	0.39	+0.1
3,323,027	-	SO3184	0.39	-1.1
3,323,027	-	SO3184	0.39	-1.4
3,323,027	-	SO3184	0.39	-3.9
3,323,027	-	SO3184	0.39	-1.5
3,323,027	-	SO3184	0.39	-1.8
3,323,027	-	SO3184	0.39	-1.2
3,323,027	-	SO3184	0.39	-0.5
3,323,027	-	SO3184	0.39	-3.6
3,323,027	-	SO3184	0.39	-1.8
3,323,027	-	SO3184	0.39	-3.1
3,323,027	-	SO3184	0.39	-1.9
3,323,027	-	SO3184	0.39	-1.8
3,323,027	-	SO3184	0.39	-2.3
3,323,027	-	SO3184	0.39	-2.9
3,323,027	-	SO3184	0.39	-0.5
3,323,027	-	SO3184	0.39	-2.2
3,323,027	-	SO3184	0.39	-1.1
3,323,027	-	SO3184	0.39	+0.1
3,323,027	-	SO3184	0.39	-2.4
3,323,027	-	SO3184	0.39	-2.9
3,323,027	-	SO3184	0.39	-1.5
3,323,027	-	SO3184	0.39	-0.8
3,323,027	-	SO3184	0.39	-2.5
3,323,027	-	SO3184	0.39	-1.7
3,323,027	-	SO3184	0.39	-1.8
3,323,027	-	SO3184	0.39	-1.6
3,323,027	-	SO3184	0.39	-1.4
3,323,027	-	SO3184	0.39	-1.7
3,323,027	-	SO3184	0.39	-3.2
3,323,027	-	SO3184	0.39	-2.2
3,323,027	-	SO3184	0.39	-3.3
3,323,027	-	SO3184	0.39	-1.5
3,323,027	-	SO3184	0.39	-0.8
3,323,027	-	SO3184	0.39	-2.4
3,323,027	-	SO3184	0.39	-2.4
3,323,027	-	SO3184	0.39	-0.2
3,323,027	-	SO3184	0.39	-3.0
3,323,109	+	SO3184	0.50	-2.5
3,323,109	+	SO3184	0.50	-2.7
3,323,109	+	SO3184	0.50	-1.4
3,323,117	-	SO3184	0.51	-2.2
3,323,117	-	SO3184	0.51	-1.8
3,323,117	-	SO3184	0.51	-2.6
3,323,117	-	SO3184	0.51	-2.5
3,323,117	-	SO3184	0.51	-2.5
3,323,117	-	SO3184	0.51	-1.5
3,323,117	-	SO3184	0.51	-2.4
3,323,142	+	SO3184	0.54	-3.1
3,323,142	+	SO3184	0.54	-1.4
3,323,142	+	SO3184	0.54	-1.5
3,323,150	-	SO3184	0.56	-0.9
3,323,150	-	SO3184	0.56	-1.9
3,323,150	-	SO3184	0.56	-1.7
3,323,150	-	SO3184	0.56	-2.6
3,323,150	-	SO3184	0.56	+0.5
3,323,154	+	SO3184	0.56	+0.1
3,323,154	+	SO3184	0.56	-2.9
3,323,154	+	SO3184	0.56	-3.6
3,323,162	-	SO3184	0.57	-2.6
3,323,162	-	SO3184	0.57	-2.4
3,323,162	-	SO3184	0.57	-1.7
3,323,162	-	SO3184	0.57	+0.2
3,323,162	-	SO3184	0.57	-2.3
3,323,185	-	SO3184	0.60	-1.6
3,323,215	-	SO3184	0.65	-2.1
3,323,251	-	SO3184	0.70	-1.2
3,323,256	-	SO3184	0.70	-2.9
3,323,256	-	SO3184	0.70	-2.5
3,323,256	-	SO3184	0.70	-1.5
3,323,301	+	SO3184	0.76	-1.9
3,323,309	-	SO3184	0.78	+0.1
3,323,309	-	SO3184	0.78	-0.2
3,323,309	-	SO3184	0.78	-0.5
3,323,314	+	SO3184	0.78	-2.9
3,323,314	+	SO3184	0.78	-1.9
3,323,323	-	SO3184	0.80	-2.6
3,323,358	-	SO3184	0.84	-2.5
3,323,371	+	SO3184	0.86	-1.5
3,323,377	-	SO3184	0.87	-1.2
3,323,379	-	SO3184	0.87	-1.1
3,323,416	+			-1.7
3,323,429	+			+0.1
3,323,481	-			-1.8
3,323,489	-			+0.2
3,323,519	+			-1.9
3,323,527	+			-0.9
3,323,527	+			-1.9
3,323,527	+			-1.8
3,323,527	-			-1.7
3,323,530	+			-0.5
3,323,532	-			-2.7
3,323,532	-			-2.1
3,323,535	+			-3.2
3,323,535	-			-0.9
3,323,535	-			-2.3
3,323,537	+			-1.0
3,323,538	-			-1.9
3,323,538	-			-1.2
3,323,538	-			-2.1
3,323,543	-			-2.1
3,323,545	-			-2.7
3,323,545	-			-2.8
3,323,545	-			-2.5
3,323,551	+			-0.9
3,323,587	+	SO3185	0.11	-1.9
3,323,587	+	SO3185	0.11	-0.5
3,323,587	+	SO3185	0.11	-3.9
3,323,589	-	SO3185	0.11	-2.4
3,323,595	-	SO3185	0.12	-3.2
3,323,595	-	SO3185	0.12	-2.4
3,323,599	+	SO3185	0.12	-1.1
3,323,607	-	SO3185	0.13	-1.0
3,323,607	-	SO3185	0.13	-0.3
3,323,607	-	SO3185	0.13	-0.9
3,323,607	-	SO3185	0.13	-2.4
3,323,614	-	SO3185	0.13	-1.7
3,323,614	-	SO3185	0.13	-1.9
3,323,648	-	SO3185	0.17	-2.6
3,323,681	-	SO3185	0.20	-1.8
3,323,767	+	SO3185	0.28	-3.2
3,323,796	+	SO3185	0.30	-0.0
3,323,796	+	SO3185	0.30	-2.4
3,323,796	+	SO3185	0.30	-2.1
3,323,804	-	SO3185	0.31	-1.4
3,323,804	-	SO3185	0.31	-3.4
3,323,804	-	SO3185	0.31	-3.2
3,323,847	-	SO3185	0.35	-4.8
3,323,847	-	SO3185	0.35	-0.8
3,323,847	-	SO3185	0.35	-2.0
3,323,847	-	SO3185	0.35	-0.9
3,323,852	-	SO3185	0.35	-3.1
3,323,873	-			+2.1
3,323,891	+	SO3185	0.39	-0.8
3,323,899	-	SO3185	0.40	-1.6
3,323,899	-	SO3185	0.40	-1.2
3,323,899	-	SO3185	0.40	-1.7
3,323,975	+	SO3185	0.47	-0.9
3,323,980	+	SO3185	0.47	-2.2
3,323,980	+	SO3185	0.47	-3.4
3,323,980	+	SO3185	0.47	-2.1
3,323,980	+	SO3185	0.47	+0.5
3,323,980	+	SO3185	0.47	-2.2
3,323,980	+	SO3185	0.47	-1.1
3,323,980	+	SO3185	0.47	-1.2
3,323,983	-	SO3185	0.48	-2.6
3,323,983	-	SO3185	0.48	-1.9
3,323,988	-	SO3185	0.48	-1.2
3,323,988	-	SO3185	0.48	-0.9
3,323,988	-	SO3185	0.48	-0.6
3,323,988	-	SO3185	0.48	-1.9
3,323,988	-	SO3185	0.48	-0.9
3,323,988	-	SO3185	0.48	-1.2
3,323,988	-	SO3185	0.48	-1.5
3,323,988	-	SO3185	0.48	-1.5
3,323,988	-	SO3185	0.48	-0.9
3,324,024	-	SO3185	0.51	-0.3
3,324,048	-	SO3185	0.54	-1.1
3,324,094	-	SO3185	0.58	-1.0
3,324,096	-	SO3185	0.58	-1.3
3,324,154	+	SO3185	0.64	-1.7
3,324,155	+	SO3185	0.64	-0.6
3,324,155	+	SO3185	0.64	-0.7
3,324,162	-	SO3185	0.64	-1.5
3,324,164	+	SO3185	0.64	-1.3
3,324,170	-	SO3185	0.65	-1.5
3,324,170	-	SO3185	0.65	-1.2
3,324,172	-	SO3185	0.65	-3.6
3,324,172	-	SO3185	0.65	-0.6
3,324,179	-	SO3185	0.66	-2.6
3,324,188	-	SO3185	0.67	-2.2
3,324,189	-	SO3185	0.67	-2.5
3,324,219	+			+0.1
3,324,227	-	SO3185	0.70	-1.7
3,324,227	-	SO3185	0.70	-2.6
3,324,237	+	SO3185	0.71	-0.7
3,324,244	+	SO3185	0.72	-1.2
3,324,244	+	SO3185	0.72	-1.7
3,324,244	-	SO3185	0.72	-1.9
3,324,244	-	SO3185	0.72	-2.1
3,324,252	-	SO3185	0.73	-0.9
3,324,252	-	SO3185	0.73	-2.6
3,324,252	-	SO3185	0.73	-2.4
3,324,267	+	SO3185	0.74	+0.5
3,324,268	+	SO3185	0.74	-3.2
3,324,274	-	SO3185	0.75	-3.2
3,324,275	-	SO3185	0.75	-0.9
3,324,275	-	SO3185	0.75	-2.2
3,324,276	-	SO3185	0.75	-2.4
3,324,279	+	SO3185	0.75	-2.7
3,324,291	+	SO3185	0.76	-1.2
3,324,316	-	SO3185	0.79	-1.2
3,324,341	-	SO3185	0.81	-2.7
3,324,346	-	SO3185	0.81	-2.9
3,324,356	-	SO3185	0.82	-2.6
3,324,383	-	SO3185	0.85	-2.2
3,324,391	-	SO3185	0.86	-0.3
3,324,408	-	SO3185	0.87	-1.0
3,324,413	-	SO3185	0.88	-0.2
3,324,415	-	SO3185	0.88	-2.7
3,324,415	-	SO3185	0.88	-1.2
3,324,415	-	SO3185	0.88	-1.6
3,324,415	-	SO3185	0.88	-2.7
3,324,415	-	SO3185	0.88	-3.2
3,324,415	-	SO3185	0.88	-2.8
3,324,415	-	SO3185	0.88	-1.4
3,324,415	-	SO3185	0.88	-4.0
3,324,415	-	SO3185	0.88	-2.7
3,324,439	+			-2.5
3,324,439	+			-0.9
3,324,443	-			-1.2
3,324,447	-			-2.2
3,324,447	-			-1.5
3,324,463	+			-1.5
3,324,468	+			-2.1

Or see this region's nucleotide sequence