Experiment: ShewMM_MES_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0570 and SO0572 are separated by 573 nucleotides SO0572 and SO0573 are separated by 135 nucleotides
SO0570: SO0570 - response regulator (NCBI ptt file), at 590,611 to 591,606
SO0570
SO0572: SO0572 - enoyl-CoA hydratase/isomerase family protein (NCBI ptt file), at 592,180 to 592,986
SO0572
SO0573: SO0573 - hypothetical protein (NCBI ptt file), at 593,122 to 594,018
SO0573
Position (kb) 592
593 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 591.220 kb on + strand, within SO0570 at 591.234 kb on + strand, within SO0570 at 591.249 kb on - strand, within SO0570 at 591.323 kb on + strand, within SO0570 at 591.323 kb on + strand, within SO0570 at 591.341 kb on + strand, within SO0570 at 591.414 kb on + strand, within SO0570 at 591.414 kb on + strand, within SO0570 at 591.471 kb on - strand, within SO0570 at 591.471 kb on - strand, within SO0570 at 591.471 kb on - strand, within SO0570 at 591.471 kb on - strand, within SO0570 at 591.586 kb on + strand at 591.586 kb on + strand at 591.591 kb on + strand at 591.594 kb on - strand at 591.599 kb on - strand at 591.620 kb on - strand at 591.620 kb on - strand at 591.623 kb on + strand at 591.655 kb on - strand at 591.718 kb on - strand at 591.774 kb on - strand at 591.845 kb on + strand at 591.845 kb on + strand at 591.853 kb on - strand at 591.891 kb on + strand at 591.899 kb on + strand at 591.899 kb on - strand at 591.901 kb on + strand at 591.902 kb on + strand at 591.908 kb on - strand at 591.909 kb on - strand at 591.909 kb on - strand at 591.934 kb on - strand at 591.953 kb on - strand at 592.052 kb on + strand at 592.060 kb on - strand at 592.176 kb on + strand at 592.176 kb on + strand at 592.191 kb on - strand at 592.203 kb on - strand at 592.466 kb on + strand, within SO0572 at 592.481 kb on + strand, within SO0572 at 592.506 kb on + strand, within SO0572 at 592.513 kb on + strand, within SO0572 at 592.577 kb on + strand, within SO0572 at 592.713 kb on + strand, within SO0572 at 592.713 kb on + strand, within SO0572 at 592.721 kb on - strand, within SO0572 at 592.748 kb on - strand, within SO0572 at 592.749 kb on - strand, within SO0572 at 592.796 kb on - strand, within SO0572 at 592.849 kb on + strand, within SO0572 at 592.859 kb on + strand, within SO0572 at 592.957 kb on - strand at 593.055 kb on + strand at 593.063 kb on - strand at 593.063 kb on - strand at 593.113 kb on + strand at 593.121 kb on - strand at 593.473 kb on - strand, within SO0573 at 593.483 kb on - strand, within SO0573 at 593.499 kb on + strand, within SO0573 at 593.501 kb on - strand, within SO0573 at 593.559 kb on + strand, within SO0573 at 593.694 kb on + strand, within SO0573 at 593.785 kb on + strand, within SO0573 at 593.785 kb on + strand, within SO0573 at 593.793 kb on - strand, within SO0573 at 593.816 kb on + strand, within SO0573 at 593.835 kb on - strand, within SO0573 at 593.910 kb on + strand, within SO0573 at 593.910 kb on + strand, within SO0573 at 593.918 kb on + strand, within SO0573 at 593.918 kb on - strand, within SO0573 at 593.939 kb on + strand at 593.947 kb on - strand at 593.947 kb on - strand at 593.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ShewMM_MES_buffer remove 591,220 + SO0570 0.61 +0.3 591,234 + SO0570 0.63 +0.5 591,249 - SO0570 0.64 +0.7 591,323 + SO0570 0.71 +0.2 591,323 + SO0570 0.71 +0.6 591,341 + SO0570 0.73 -0.2 591,414 + SO0570 0.81 +0.3 591,414 + SO0570 0.81 +0.1 591,471 - SO0570 0.86 +0.8 591,471 - SO0570 0.86 +0.4 591,471 - SO0570 0.86 -0.1 591,471 - SO0570 0.86 +1.1 591,586 + +0.1 591,586 + -1.2 591,591 + -0.5 591,594 - +0.1 591,599 - +0.4 591,620 - +0.1 591,620 - -0.9 591,623 + +0.2 591,655 - -0.1 591,718 - +0.1 591,774 - -0.2 591,845 + +0.2 591,845 + +0.9 591,853 - +0.5 591,891 + +0.4 591,899 + +0.1 591,899 - -1.3 591,901 + +0.1 591,902 + -0.5 591,908 - -0.4 591,909 - +0.1 591,909 - -0.8 591,934 - -1.4 591,953 - -0.5 592,052 + +1.1 592,060 - +0.2 592,176 + +0.7 592,176 + +3.4 592,191 - +0.9 592,203 - -1.9 592,466 + SO0572 0.35 +0.1 592,481 + SO0572 0.37 -0.7 592,506 + SO0572 0.40 -0.1 592,513 + SO0572 0.41 -0.4 592,577 + SO0572 0.49 +0.9 592,713 + SO0572 0.66 -0.2 592,713 + SO0572 0.66 -0.1 592,721 - SO0572 0.67 +0.0 592,748 - SO0572 0.70 -0.6 592,749 - SO0572 0.71 +0.1 592,796 - SO0572 0.76 +0.6 592,849 + SO0572 0.83 +0.4 592,859 + SO0572 0.84 -1.6 592,957 - +0.8 593,055 + -0.1 593,063 - +0.7 593,063 - +0.5 593,113 + +0.1 593,121 - -0.0 593,473 - SO0573 0.39 +0.8 593,483 - SO0573 0.40 -0.6 593,499 + SO0573 0.42 +0.2 593,501 - SO0573 0.42 +1.4 593,559 + SO0573 0.49 +0.6 593,694 + SO0573 0.64 +0.1 593,785 + SO0573 0.74 +0.1 593,785 + SO0573 0.74 +0.2 593,793 - SO0573 0.75 -0.1 593,816 + SO0573 0.77 -0.1 593,835 - SO0573 0.79 -0.5 593,910 + SO0573 0.88 +0.0 593,910 + SO0573 0.88 +0.1 593,918 + SO0573 0.89 +0.2 593,918 - SO0573 0.89 +0.1 593,939 + -0.5 593,947 - +0.3 593,947 - +0.4 593,980 - +0.4
Or see this region's nucleotide sequence