Experiment: ShewMM_MES_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0189 and SO0190 are separated by 237 nucleotides SO0190 and cysQ-1 are separated by 69 nucleotides cysQ-1 and SO0192 are separated by 7 nucleotides SO0192 and SO0193 are separated by 235 nucleotides
SO0189: SO0189 - fibronectin type III domain protein (NCBI ptt file), at 192,488 to 200,056
SO0189
SO0190: SO0190 - MutT/nudix family protein (NCBI ptt file), at 200,294 to 200,845
SO0190
SO0191: cysQ-1 - cysQ protein (NCBI ptt file), at 200,915 to 201,727
cysQ-1
SO0192: SO0192 - acetyltransferase, GNAT family (NCBI ptt file), at 201,735 to 202,178
SO0192
SO0193: SO0193 - transcriptional regulator, TetR family (NCBI ptt file), at 202,414 to 203,025
SO0193
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1 at 199.918 kb on - strand at 199.925 kb on + strand at 200.025 kb on + strand at 200.033 kb on - strand at 200.058 kb on - strand at 200.058 kb on - strand at 200.125 kb on - strand at 200.131 kb on + strand at 200.199 kb on - strand at 200.416 kb on + strand, within SO0190 at 200.610 kb on + strand, within SO0190 at 200.737 kb on + strand, within SO0190 at 200.743 kb on + strand, within SO0190 at 200.751 kb on - strand, within SO0190 at 200.965 kb on + strand at 200.989 kb on + strand at 201.040 kb on - strand, within cysQ-1 at 201.194 kb on + strand, within cysQ-1 at 201.241 kb on + strand, within cysQ-1 at 201.292 kb on + strand, within cysQ-1 at 201.371 kb on + strand, within cysQ-1 at 201.379 kb on - strand, within cysQ-1 at 201.392 kb on + strand, within cysQ-1 at 201.399 kb on + strand, within cysQ-1 at 201.400 kb on - strand, within cysQ-1 at 201.454 kb on + strand, within cysQ-1 at 201.499 kb on - strand, within cysQ-1 at 201.499 kb on - strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.629 kb on + strand, within cysQ-1 at 201.696 kb on - strand at 201.789 kb on + strand, within SO0192 at 201.820 kb on - strand, within SO0192 at 201.915 kb on + strand, within SO0192 at 201.966 kb on + strand, within SO0192 at 201.979 kb on + strand, within SO0192 at 201.979 kb on + strand, within SO0192 at 201.979 kb on + strand, within SO0192 at 201.987 kb on - strand, within SO0192 at 201.992 kb on - strand, within SO0192 at 201.998 kb on - strand, within SO0192 at 202.012 kb on + strand, within SO0192 at 202.020 kb on - strand, within SO0192 at 202.034 kb on + strand, within SO0192 at 202.034 kb on + strand, within SO0192 at 202.034 kb on + strand, within SO0192 at 202.034 kb on + strand, within SO0192 at 202.042 kb on - strand, within SO0192 at 202.042 kb on - strand, within SO0192 at 202.042 kb on - strand, within SO0192 at 202.115 kb on + strand, within SO0192 at 202.191 kb on - strand at 202.273 kb on + strand at 202.288 kb on - strand at 202.295 kb on - strand at 202.323 kb on - strand at 202.411 kb on - strand at 202.417 kb on - strand at 202.429 kb on + strand at 202.505 kb on + strand, within SO0193 at 202.565 kb on - strand, within SO0193 at 202.617 kb on - strand, within SO0193 at 202.716 kb on - strand, within SO0193 at 202.721 kb on + strand, within SO0193 at 202.721 kb on + strand, within SO0193
Per-strain Table
Position Strand Gene LocusTag Fraction ShewMM_MES_buffer remove 199,918 - -0.4 199,925 + +0.9 200,025 + -0.5 200,033 - +0.2 200,058 - +0.1 200,058 - +0.0 200,125 - -0.5 200,131 + -0.2 200,199 - -0.5 200,416 + SO0190 0.22 +0.4 200,610 + SO0190 0.57 -0.0 200,737 + SO0190 0.80 +0.0 200,743 + SO0190 0.81 -0.7 200,751 - SO0190 0.83 -1.5 200,965 + +0.6 200,989 + -0.3 201,040 - cysQ-1 SO0191 0.15 -1.9 201,194 + cysQ-1 SO0191 0.34 -0.6 201,241 + cysQ-1 SO0191 0.40 -0.3 201,292 + cysQ-1 SO0191 0.46 -1.3 201,371 + cysQ-1 SO0191 0.56 -0.0 201,379 - cysQ-1 SO0191 0.57 +0.5 201,392 + cysQ-1 SO0191 0.59 -0.5 201,399 + cysQ-1 SO0191 0.60 -0.7 201,400 - cysQ-1 SO0191 0.60 +0.5 201,454 + cysQ-1 SO0191 0.66 +0.1 201,499 - cysQ-1 SO0191 0.72 -1.2 201,499 - cysQ-1 SO0191 0.72 -1.0 201,512 + cysQ-1 SO0191 0.73 -2.2 201,512 + cysQ-1 SO0191 0.73 -1.3 201,512 + cysQ-1 SO0191 0.73 -0.5 201,512 + cysQ-1 SO0191 0.73 -0.1 201,512 + cysQ-1 SO0191 0.73 -0.9 201,629 + cysQ-1 SO0191 0.88 -0.0 201,696 - -0.5 201,789 + SO0192 0.12 +0.4 201,820 - SO0192 0.19 -0.3 201,915 + SO0192 0.41 -0.2 201,966 + SO0192 0.52 -0.2 201,979 + SO0192 0.55 +0.1 201,979 + SO0192 0.55 +0.8 201,979 + SO0192 0.55 +0.6 201,987 - SO0192 0.57 +0.0 201,992 - SO0192 0.58 -0.6 201,998 - SO0192 0.59 -0.4 202,012 + SO0192 0.62 -0.6 202,020 - SO0192 0.64 +0.2 202,034 + SO0192 0.67 -0.5 202,034 + SO0192 0.67 -0.2 202,034 + SO0192 0.67 -0.1 202,034 + SO0192 0.67 -0.1 202,042 - SO0192 0.69 -0.1 202,042 - SO0192 0.69 -0.5 202,042 - SO0192 0.69 -0.0 202,115 + SO0192 0.86 +0.2 202,191 - +0.3 202,273 + -0.3 202,288 - -0.1 202,295 - +0.3 202,323 - +0.5 202,411 - +1.1 202,417 - -0.4 202,429 + +0.2 202,505 + SO0193 0.15 +1.5 202,565 - SO0193 0.25 +0.8 202,617 - SO0193 0.33 +0.2 202,716 - SO0193 0.49 +0.5 202,721 + SO0193 0.50 +0.2 202,721 + SO0193 0.50 +0.0
Or see this region's nucleotide sequence