Strain Fitness in Marinobacter adhaerens HP15 around HP15_89

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_87 and HP15_88 overlap by 4 nucleotidesHP15_88 and HP15_89 are separated by 63 nucleotidesHP15_89 and HP15_90 are separated by 61 nucleotidesHP15_90 and HP15_91 overlap by 4 nucleotides HP15_87: HP15_87 - disulfide oxidoreductase C BdbC, at 93,494 to 93,928 _87 HP15_88: HP15_88 - cation efflux protein, at 93,925 to 94,650 _88 HP15_89: HP15_89 - transcriptional regulator, MerR family protein, at 94,714 to 95,127 _89 HP15_90: HP15_90 - electron transport protein SCO1/SenC, at 95,189 to 95,812 _90 HP15_91: HP15_91 - conserved hypothetical protein, membrane, at 95,809 to 96,651 _91 Position (kb) 94 95 96Strain fitness (log2 ratio) -1 0 1at 93.720 kb on - strand, within HP15_87at 93.798 kb on + strand, within HP15_87at 93.811 kb on - strand, within HP15_87at 93.813 kb on + strand, within HP15_87at 93.995 kb on - strandat 94.000 kb on + strand, within HP15_88at 94.002 kb on + strand, within HP15_88at 94.127 kb on - strand, within HP15_88at 94.137 kb on + strand, within HP15_88at 94.139 kb on + strand, within HP15_88at 94.145 kb on - strand, within HP15_88at 94.147 kb on - strand, within HP15_88at 94.147 kb on - strand, within HP15_88at 94.153 kb on + strand, within HP15_88at 94.161 kb on - strand, within HP15_88at 94.210 kb on + strand, within HP15_88at 94.235 kb on - strand, within HP15_88at 94.260 kb on + strand, within HP15_88at 94.315 kb on - strand, within HP15_88at 94.410 kb on - strand, within HP15_88at 94.506 kb on + strand, within HP15_88at 94.519 kb on - strand, within HP15_88at 94.577 kb on + strand, within HP15_88at 94.599 kb on - strandat 94.667 kb on - strandat 94.667 kb on - strandat 94.699 kb on - strandat 94.702 kb on + strandat 94.709 kb on + strandat 94.709 kb on + strandat 94.900 kb on - strand, within HP15_89at 94.912 kb on - strand, within HP15_89at 95.052 kb on - strand, within HP15_89at 95.062 kb on - strand, within HP15_89at 95.110 kb on + strandat 95.120 kb on - strandat 95.120 kb on - strandat 95.147 kb on - strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.148 kb on + strandat 95.158 kb on + strandat 95.166 kb on - strandat 95.169 kb on + strandat 95.366 kb on - strand, within HP15_90at 95.384 kb on + strand, within HP15_90at 95.392 kb on - strand, within HP15_90at 95.624 kb on - strand, within HP15_90at 95.640 kb on - strand, within HP15_90at 95.758 kb on + strandat 95.758 kb on + strandat 95.889 kb on - strandat 95.918 kb on + strand, within HP15_91at 95.919 kb on + strand, within HP15_91at 95.921 kb on + strand, within HP15_91at 95.921 kb on + strand, within HP15_91at 95.929 kb on - strand, within HP15_91at 95.929 kb on - strand, within HP15_91

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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93,720 - HP15_87 0.52 -0.2
93,798 + HP15_87 0.70 -0.6
93,811 - HP15_87 0.73 +0.3
93,813 + HP15_87 0.73 +1.5
93,995 - -0.7
94,000 + HP15_88 0.10 -0.8
94,002 + HP15_88 0.11 -0.6
94,127 - HP15_88 0.28 -0.1
94,137 + HP15_88 0.29 -0.5
94,139 + HP15_88 0.29 -0.3
94,145 - HP15_88 0.30 +0.9
94,147 - HP15_88 0.31 +0.9
94,147 - HP15_88 0.31 -0.4
94,153 + HP15_88 0.31 +0.7
94,161 - HP15_88 0.33 +0.4
94,210 + HP15_88 0.39 -1.2
94,235 - HP15_88 0.43 +0.5
94,260 + HP15_88 0.46 -0.5
94,315 - HP15_88 0.54 -0.4
94,410 - HP15_88 0.67 -0.4
94,506 + HP15_88 0.80 +1.5
94,519 - HP15_88 0.82 +0.2
94,577 + HP15_88 0.90 -0.9
94,599 - -0.1
94,667 - -0.2
94,667 - -0.4
94,699 - +0.1
94,702 + -1.0
94,709 + -0.4
94,709 + +1.0
94,900 - HP15_89 0.45 -0.4
94,912 - HP15_89 0.48 +0.4
95,052 - HP15_89 0.82 -1.3
95,062 - HP15_89 0.84 -0.8
95,110 + -0.3
95,120 - -0.3
95,120 - +0.1
95,147 - +0.9
95,148 + +0.9
95,148 + -0.9
95,148 + +0.1
95,148 + +0.3
95,148 + -0.4
95,148 + -0.2
95,158 + +0.4
95,166 - +0.8
95,169 + +0.1
95,366 - HP15_90 0.28 -0.0
95,384 + HP15_90 0.31 -1.0
95,392 - HP15_90 0.33 -0.3
95,624 - HP15_90 0.70 +1.5
95,640 - HP15_90 0.72 -0.5
95,758 + +0.9
95,758 + +1.0
95,889 - -0.5
95,918 + HP15_91 0.13 -0.5
95,919 + HP15_91 0.13 -0.4
95,921 + HP15_91 0.13 -0.3
95,921 + HP15_91 0.13 -1.2
95,929 - HP15_91 0.14 +0.3
95,929 - HP15_91 0.14 -0.9

Or see this region's nucleotide sequence