Experiment: m.b. 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_779 and HP15_780 are separated by 102 nucleotides HP15_780 and HP15_781 are separated by 104 nucleotides
HP15_779: HP15_779 - serine protease MucD precursor, at 788,493 to 789,917
_779
HP15_780: HP15_780 - sensory box/GGDEF family protein, at 790,020 to 792,770
_780
HP15_781: HP15_781 - GTP-binding protein LepA, at 792,875 to 794,677
_781
Position (kb) 790
791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 789.062 kb on + strand, within HP15_779 at 789.342 kb on - strand, within HP15_779 at 789.391 kb on - strand, within HP15_779 at 789.914 kb on + strand at 789.969 kb on - strand at 790.060 kb on + strand at 790.146 kb on - strand at 790.257 kb on + strand at 790.445 kb on + strand, within HP15_780 at 790.466 kb on + strand, within HP15_780 at 790.506 kb on - strand, within HP15_780 at 790.591 kb on - strand, within HP15_780 at 790.668 kb on - strand, within HP15_780 at 790.670 kb on + strand, within HP15_780 at 790.670 kb on + strand, within HP15_780 at 790.848 kb on + strand, within HP15_780 at 791.052 kb on + strand, within HP15_780 at 791.089 kb on - strand, within HP15_780 at 791.089 kb on - strand, within HP15_780 at 791.098 kb on + strand, within HP15_780 at 791.224 kb on + strand, within HP15_780 at 791.435 kb on + strand, within HP15_780 at 791.443 kb on - strand, within HP15_780 at 791.443 kb on - strand, within HP15_780 at 791.568 kb on + strand, within HP15_780 at 791.796 kb on - strand, within HP15_780 at 791.886 kb on - strand, within HP15_780 at 791.969 kb on + strand, within HP15_780 at 792.060 kb on + strand, within HP15_780 at 792.123 kb on + strand, within HP15_780 at 792.194 kb on + strand, within HP15_780 at 792.204 kb on - strand, within HP15_780 at 792.209 kb on - strand, within HP15_780 at 792.301 kb on + strand, within HP15_780 at 792.328 kb on - strand, within HP15_780 at 792.357 kb on + strand, within HP15_780 at 792.615 kb on - strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.688 kb on - strand at 793.001 kb on + strand at 793.066 kb on + strand, within HP15_781 at 793.066 kb on + strand, within HP15_781 at 793.066 kb on + strand, within HP15_781 at 793.196 kb on + strand, within HP15_781 at 793.763 kb on + strand, within HP15_781
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 37C remove 789,062 + HP15_779 0.40 -2.0 789,342 - HP15_779 0.60 -3.4 789,391 - HP15_779 0.63 -1.3 789,914 + -0.5 789,969 - -0.2 790,060 + -0.2 790,146 - +0.0 790,257 + -0.0 790,445 + HP15_780 0.15 +0.3 790,466 + HP15_780 0.16 +1.6 790,506 - HP15_780 0.18 -0.5 790,591 - HP15_780 0.21 +1.7 790,668 - HP15_780 0.24 -1.1 790,670 + HP15_780 0.24 +0.5 790,670 + HP15_780 0.24 +0.3 790,848 + HP15_780 0.30 +1.6 791,052 + HP15_780 0.38 +1.4 791,089 - HP15_780 0.39 +1.7 791,089 - HP15_780 0.39 +2.7 791,098 + HP15_780 0.39 +0.3 791,224 + HP15_780 0.44 -0.1 791,435 + HP15_780 0.51 -0.5 791,443 - HP15_780 0.52 -0.5 791,443 - HP15_780 0.52 +1.4 791,568 + HP15_780 0.56 -0.2 791,796 - HP15_780 0.65 +0.1 791,886 - HP15_780 0.68 -0.9 791,969 + HP15_780 0.71 +0.8 792,060 + HP15_780 0.74 +2.3 792,123 + HP15_780 0.76 +1.2 792,194 + HP15_780 0.79 -0.3 792,204 - HP15_780 0.79 +1.4 792,209 - HP15_780 0.80 +0.4 792,301 + HP15_780 0.83 -0.1 792,328 - HP15_780 0.84 +0.6 792,357 + HP15_780 0.85 +1.6 792,615 - +1.7 792,637 + +0.7 792,637 + +0.6 792,637 + +0.4 792,688 - +1.2 793,001 + -0.9 793,066 + HP15_781 0.11 -0.1 793,066 + HP15_781 0.11 +1.4 793,066 + HP15_781 0.11 -1.6 793,196 + HP15_781 0.18 -0.7 793,763 + HP15_781 0.49 +0.1
Or see this region's nucleotide sequence