Strain Fitness in Marinobacter adhaerens HP15 around HP15_619

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_618 and HP15_619 are separated by 82 nucleotidesHP15_619 and HP15_620 are separated by 115 nucleotides HP15_618: HP15_618 - acyl-CoA dehydrogenase domain protein, at 640,556 to 641,737 _618 HP15_619: HP15_619 - protein belonging to uncharacterized protein family UPF0061, at 641,820 to 643,562 _619 HP15_620: HP15_620 - conserved hypothetical protein, secreted, at 643,678 to 645,561 _620 Position (kb) 641 642 643 644Strain fitness (log2 ratio) -2 -1 0 1 2at 640.826 kb on + strand, within HP15_618at 640.850 kb on + strand, within HP15_618at 640.858 kb on - strand, within HP15_618at 640.865 kb on - strand, within HP15_618at 640.941 kb on - strand, within HP15_618at 640.997 kb on + strand, within HP15_618at 641.107 kb on + strand, within HP15_618at 641.130 kb on + strand, within HP15_618at 641.266 kb on - strand, within HP15_618at 641.288 kb on + strand, within HP15_618at 641.376 kb on + strand, within HP15_618at 641.393 kb on - strand, within HP15_618at 641.516 kb on - strand, within HP15_618at 641.584 kb on - strand, within HP15_618at 641.614 kb on - strand, within HP15_618at 641.656 kb on + strandat 641.664 kb on - strandat 641.667 kb on + strandat 641.667 kb on + strandat 641.764 kb on + strandat 641.777 kb on - strandat 641.777 kb on - strandat 641.782 kb on - strandat 641.987 kb on + strandat 642.000 kb on - strand, within HP15_619at 642.010 kb on + strand, within HP15_619at 642.075 kb on - strand, within HP15_619at 642.110 kb on + strand, within HP15_619at 642.248 kb on + strand, within HP15_619at 642.285 kb on - strand, within HP15_619at 642.418 kb on + strand, within HP15_619at 642.669 kb on - strand, within HP15_619at 642.871 kb on - strand, within HP15_619at 642.872 kb on - strand, within HP15_619at 642.879 kb on + strand, within HP15_619at 642.879 kb on + strand, within HP15_619at 642.967 kb on - strand, within HP15_619at 643.051 kb on - strand, within HP15_619at 643.115 kb on - strand, within HP15_619at 643.122 kb on - strand, within HP15_619at 643.217 kb on + strand, within HP15_619at 643.317 kb on - strand, within HP15_619at 643.317 kb on - strand, within HP15_619at 643.457 kb on + strandat 643.480 kb on + strandat 643.488 kb on - strandat 643.488 kb on - strandat 643.488 kb on - strandat 643.518 kb on - strandat 643.526 kb on - strandat 643.631 kb on + strandat 643.631 kb on + strandat 643.631 kb on + strandat 643.639 kb on - strandat 643.789 kb on - strandat 643.793 kb on - strandat 643.831 kb on + strandat 643.856 kb on - strandat 643.903 kb on + strand, within HP15_620at 643.924 kb on - strand, within HP15_620at 643.924 kb on - strand, within HP15_620at 643.928 kb on + strand, within HP15_620at 643.936 kb on - strand, within HP15_620at 643.939 kb on + strand, within HP15_620at 643.940 kb on - strand, within HP15_620at 644.017 kb on - strand, within HP15_620at 644.054 kb on + strand, within HP15_620at 644.329 kb on + strand, within HP15_620at 644.337 kb on - strand, within HP15_620at 644.338 kb on - strand, within HP15_620at 644.373 kb on - strand, within HP15_620at 644.400 kb on - strand, within HP15_620at 644.453 kb on + strand, within HP15_620at 644.461 kb on - strand, within HP15_620at 644.463 kb on + strand, within HP15_620at 644.471 kb on - strand, within HP15_620at 644.508 kb on + strand, within HP15_620at 644.510 kb on + strand, within HP15_620at 644.510 kb on + strand, within HP15_620at 644.546 kb on + strand, within HP15_620

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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640,826 + HP15_618 0.23 +1.3
640,850 + HP15_618 0.25 +0.3
640,858 - HP15_618 0.26 -0.5
640,865 - HP15_618 0.26 -0.1
640,941 - HP15_618 0.33 -0.0
640,997 + HP15_618 0.37 -0.7
641,107 + HP15_618 0.47 +0.1
641,130 + HP15_618 0.49 -0.6
641,266 - HP15_618 0.60 +0.8
641,288 + HP15_618 0.62 -0.9
641,376 + HP15_618 0.69 -0.2
641,393 - HP15_618 0.71 -0.5
641,516 - HP15_618 0.81 -0.6
641,584 - HP15_618 0.87 +0.0
641,614 - HP15_618 0.90 +0.3
641,656 + -0.4
641,664 - -0.6
641,667 + +0.1
641,667 + -0.2
641,764 + -0.3
641,777 - -0.7
641,777 - +1.1
641,782 - +1.1
641,987 + +1.4
642,000 - HP15_619 0.10 +0.8
642,010 + HP15_619 0.11 -1.9
642,075 - HP15_619 0.15 +1.9
642,110 + HP15_619 0.17 -0.3
642,248 + HP15_619 0.25 +0.5
642,285 - HP15_619 0.27 +0.4
642,418 + HP15_619 0.34 +1.3
642,669 - HP15_619 0.49 -0.6
642,871 - HP15_619 0.60 -1.1
642,872 - HP15_619 0.60 +1.0
642,879 + HP15_619 0.61 -0.5
642,879 + HP15_619 0.61 -0.6
642,967 - HP15_619 0.66 -0.6
643,051 - HP15_619 0.71 +2.3
643,115 - HP15_619 0.74 -0.4
643,122 - HP15_619 0.75 +0.7
643,217 + HP15_619 0.80 +1.3
643,317 - HP15_619 0.86 -0.4
643,317 - HP15_619 0.86 +0.9
643,457 + -0.1
643,480 + +0.0
643,488 - +0.9
643,488 - +0.8
643,488 - -0.1
643,518 - -1.3
643,526 - +1.3
643,631 + +0.1
643,631 + -0.2
643,631 + +1.3
643,639 - -0.0
643,789 - -0.3
643,793 - +1.1
643,831 + +0.9
643,856 - +0.2
643,903 + HP15_620 0.12 +1.0
643,924 - HP15_620 0.13 +1.1
643,924 - HP15_620 0.13 +0.3
643,928 + HP15_620 0.13 -0.1
643,936 - HP15_620 0.14 -0.1
643,939 + HP15_620 0.14 +0.1
643,940 - HP15_620 0.14 +1.1
644,017 - HP15_620 0.18 -0.2
644,054 + HP15_620 0.20 -0.5
644,329 + HP15_620 0.35 +0.9
644,337 - HP15_620 0.35 +0.9
644,338 - HP15_620 0.35 -0.4
644,373 - HP15_620 0.37 +0.9
644,400 - HP15_620 0.38 -0.4
644,453 + HP15_620 0.41 +1.3
644,461 - HP15_620 0.42 -0.5
644,463 + HP15_620 0.42 -0.6
644,471 - HP15_620 0.42 +1.2
644,508 + HP15_620 0.44 +0.1
644,510 + HP15_620 0.44 -0.1
644,510 + HP15_620 0.44 -0.6
644,546 + HP15_620 0.46 +1.0

Or see this region's nucleotide sequence