Strain Fitness in Marinobacter adhaerens HP15 around HP15_42

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_40 and HP15_41 are separated by 156 nucleotidesHP15_41 and HP15_42 are separated by 478 nucleotidesHP15_42 and HP15_43 are separated by 93 nucleotides HP15_40: HP15_40 - dioxygenase DitA oxygenase component small subunit-like protein, at 45,047 to 45,211 _40 HP15_41: HP15_41 - conserved hypothetical protein, at 45,368 to 45,718 _41 HP15_42: HP15_42 - short-chain dehydrogenase/reductase SDR, at 46,197 to 46,997 _42 HP15_43: HP15_43 - crotonobetaine/carnitine-CoA ligase, at 47,091 to 48,722 _43 Position (kb) 46 47Strain fitness (log2 ratio) -1 0 1at 45.308 kb on - strandat 45.473 kb on - strand, within HP15_41at 45.568 kb on + strand, within HP15_41at 45.577 kb on - strand, within HP15_41at 45.587 kb on - strand, within HP15_41at 45.645 kb on + strand, within HP15_41at 45.653 kb on - strand, within HP15_41at 45.668 kb on - strand, within HP15_41at 45.668 kb on - strand, within HP15_41at 45.675 kb on - strand, within HP15_41at 45.765 kb on + strandat 45.773 kb on + strandat 45.802 kb on - strandat 45.858 kb on - strandat 45.869 kb on + strandat 45.963 kb on + strandat 45.995 kb on + strandat 46.003 kb on - strandat 46.003 kb on - strandat 46.046 kb on - strandat 46.062 kb on + strandat 46.211 kb on + strandat 46.258 kb on + strandat 46.327 kb on - strand, within HP15_42at 46.341 kb on + strand, within HP15_42at 46.431 kb on + strand, within HP15_42at 46.541 kb on + strand, within HP15_42at 46.541 kb on + strand, within HP15_42at 46.596 kb on + strand, within HP15_42at 46.596 kb on + strand, within HP15_42at 46.596 kb on + strand, within HP15_42at 46.645 kb on - strand, within HP15_42at 46.773 kb on - strand, within HP15_42at 46.796 kb on - strand, within HP15_42at 46.938 kb on + strandat 47.027 kb on - strandat 47.070 kb on + strandat 47.155 kb on + strandat 47.243 kb on + strandat 47.285 kb on + strand, within HP15_43at 47.293 kb on - strand, within HP15_43at 47.293 kb on - strand, within HP15_43at 47.311 kb on - strand, within HP15_43at 47.323 kb on - strand, within HP15_43at 47.325 kb on + strand, within HP15_43at 47.325 kb on + strand, within HP15_43at 47.333 kb on - strand, within HP15_43at 47.488 kb on - strand, within HP15_43at 47.529 kb on + strand, within HP15_43at 47.535 kb on - strand, within HP15_43at 47.537 kb on - strand, within HP15_43at 47.559 kb on - strand, within HP15_43at 47.573 kb on + strand, within HP15_43at 47.600 kb on - strand, within HP15_43at 47.685 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.809 kb on + strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.817 kb on - strand, within HP15_43at 47.830 kb on + strand, within HP15_43at 47.906 kb on + strand, within HP15_43at 47.909 kb on - strand, within HP15_43at 47.929 kb on - strand, within HP15_43

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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45,308 - -0.2
45,473 - HP15_41 0.30 +0.1
45,568 + HP15_41 0.57 -0.3
45,577 - HP15_41 0.60 -0.5
45,587 - HP15_41 0.62 -0.2
45,645 + HP15_41 0.79 -0.1
45,653 - HP15_41 0.81 +0.6
45,668 - HP15_41 0.85 +1.2
45,668 - HP15_41 0.85 +0.7
45,675 - HP15_41 0.87 -0.1
45,765 + -0.7
45,773 + +1.1
45,802 - +1.1
45,858 - -1.4
45,869 + +0.3
45,963 + -1.0
45,995 + -0.7
46,003 - +1.0
46,003 - +0.8
46,046 - -0.1
46,062 + -0.2
46,211 + +0.3
46,258 + +0.9
46,327 - HP15_42 0.16 -0.5
46,341 + HP15_42 0.18 +0.7
46,431 + HP15_42 0.29 -0.8
46,541 + HP15_42 0.43 -1.0
46,541 + HP15_42 0.43 -0.1
46,596 + HP15_42 0.50 -1.2
46,596 + HP15_42 0.50 +0.0
46,596 + HP15_42 0.50 -0.3
46,645 - HP15_42 0.56 -0.8
46,773 - HP15_42 0.72 -0.6
46,796 - HP15_42 0.75 -0.5
46,938 + +0.0
47,027 - +0.8
47,070 + -0.0
47,155 + -0.9
47,243 + -0.3
47,285 + HP15_43 0.12 -0.4
47,293 - HP15_43 0.12 +1.0
47,293 - HP15_43 0.12 +0.9
47,311 - HP15_43 0.13 +0.6
47,323 - HP15_43 0.14 +0.8
47,325 + HP15_43 0.14 +0.6
47,325 + HP15_43 0.14 -0.1
47,333 - HP15_43 0.15 +0.7
47,488 - HP15_43 0.24 +1.1
47,529 + HP15_43 0.27 -0.5
47,535 - HP15_43 0.27 -0.1
47,537 - HP15_43 0.27 +0.8
47,559 - HP15_43 0.29 +1.3
47,573 + HP15_43 0.30 +1.4
47,600 - HP15_43 0.31 -0.4
47,685 + HP15_43 0.36 -0.4
47,809 + HP15_43 0.44 -0.3
47,809 + HP15_43 0.44 +0.8
47,809 + HP15_43 0.44 -1.0
47,809 + HP15_43 0.44 +0.0
47,809 + HP15_43 0.44 +0.7
47,809 + HP15_43 0.44 +1.5
47,809 + HP15_43 0.44 +1.3
47,809 + HP15_43 0.44 +0.9
47,809 + HP15_43 0.44 -0.8
47,809 + HP15_43 0.44 +1.2
47,817 - HP15_43 0.44 +1.3
47,817 - HP15_43 0.44 -0.7
47,817 - HP15_43 0.44 +1.5
47,817 - HP15_43 0.44 +0.0
47,817 - HP15_43 0.44 -0.4
47,817 - HP15_43 0.44 +0.1
47,830 + HP15_43 0.45 +0.5
47,906 + HP15_43 0.50 +0.1
47,909 - HP15_43 0.50 -0.1
47,929 - HP15_43 0.51 -1.4

Or see this region's nucleotide sequence