Experiment: m.b. 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3803 and HP15_3804 are separated by 124 nucleotides HP15_3804 and HP15_3805 are separated by 10 nucleotides HP15_3805 and HP15_3806 are separated by 196 nucleotides HP15_3806 and HP15_3807 overlap by 4 nucleotides
HP15_3803: HP15_3803 - GGDEF domain-like protein, at 4,028,610 to 4,029,839
_3803
HP15_3804: HP15_3804 - esterase, at 4,029,964 to 4,031,250
_3804
HP15_3805: HP15_3805 - conserved hypothetical protein, at 4,031,261 to 4,031,605
_3805
HP15_3806: HP15_3806 - conserved hypothetical protein, at 4,031,802 to 4,032,053
_3806
HP15_3807: HP15_3807 - conserved hypothetical protein, secreted, at 4,032,050 to 4,033,120
_3807
Position (kb)
4029
4030
4031
4032 Strain fitness (log2 ratio)
-1
0
1
2 at 4028.981 kb on - strand, within HP15_3803 at 4028.981 kb on - strand, within HP15_3803 at 4029.043 kb on + strand, within HP15_3803 at 4029.103 kb on - strand, within HP15_3803 at 4029.103 kb on - strand, within HP15_3803 at 4029.114 kb on - strand, within HP15_3803 at 4029.139 kb on - strand, within HP15_3803 at 4029.273 kb on - strand, within HP15_3803 at 4029.301 kb on + strand, within HP15_3803 at 4029.302 kb on - strand, within HP15_3803 at 4029.302 kb on - strand, within HP15_3803 at 4029.333 kb on + strand, within HP15_3803 at 4029.353 kb on - strand, within HP15_3803 at 4029.394 kb on - strand, within HP15_3803 at 4029.430 kb on + strand, within HP15_3803 at 4029.494 kb on + strand, within HP15_3803 at 4029.524 kb on - strand, within HP15_3803 at 4029.603 kb on - strand, within HP15_3803 at 4029.689 kb on - strand, within HP15_3803 at 4029.779 kb on + strand at 4029.834 kb on - strand at 4029.853 kb on - strand at 4029.858 kb on + strand at 4029.876 kb on - strand at 4029.883 kb on + strand at 4029.911 kb on - strand at 4029.921 kb on - strand at 4030.158 kb on + strand, within HP15_3804 at 4030.173 kb on - strand, within HP15_3804 at 4030.182 kb on - strand, within HP15_3804 at 4030.337 kb on + strand, within HP15_3804 at 4030.497 kb on + strand, within HP15_3804 at 4030.505 kb on - strand, within HP15_3804 at 4030.537 kb on - strand, within HP15_3804 at 4030.590 kb on + strand, within HP15_3804 at 4030.673 kb on + strand, within HP15_3804 at 4030.717 kb on - strand, within HP15_3804 at 4030.744 kb on + strand, within HP15_3804 at 4030.950 kb on - strand, within HP15_3804 at 4031.019 kb on - strand, within HP15_3804 at 4031.059 kb on - strand, within HP15_3804 at 4031.091 kb on + strand, within HP15_3804 at 4031.091 kb on + strand, within HP15_3804 at 4031.116 kb on + strand, within HP15_3804 at 4031.175 kb on + strand at 4031.259 kb on + strand at 4031.267 kb on - strand at 4031.268 kb on + strand at 4031.276 kb on - strand at 4031.286 kb on + strand at 4031.291 kb on + strand at 4031.303 kb on + strand, within HP15_3805 at 4031.303 kb on + strand, within HP15_3805 at 4031.352 kb on - strand, within HP15_3805 at 4031.352 kb on - strand, within HP15_3805 at 4031.379 kb on + strand, within HP15_3805 at 4031.382 kb on - strand, within HP15_3805 at 4031.393 kb on - strand, within HP15_3805 at 4031.467 kb on + strand, within HP15_3805 at 4031.467 kb on + strand, within HP15_3805 at 4031.512 kb on + strand, within HP15_3805 at 4031.654 kb on - strand at 4031.678 kb on - strand at 4032.022 kb on + strand, within HP15_3806 at 4032.022 kb on + strand, within HP15_3806 at 4032.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 37C remove 4,028,981 - HP15_3803 0.30 +0.1 4,028,981 - HP15_3803 0.30 +0.2 4,029,043 + HP15_3803 0.35 +0.5 4,029,103 - HP15_3803 0.40 +1.3 4,029,103 - HP15_3803 0.40 +2.2 4,029,114 - HP15_3803 0.41 +1.1 4,029,139 - HP15_3803 0.43 -0.2 4,029,273 - HP15_3803 0.54 -0.7 4,029,301 + HP15_3803 0.56 -0.8 4,029,302 - HP15_3803 0.56 +0.0 4,029,302 - HP15_3803 0.56 -1.0 4,029,333 + HP15_3803 0.59 +0.3 4,029,353 - HP15_3803 0.60 +1.4 4,029,394 - HP15_3803 0.64 -1.0 4,029,430 + HP15_3803 0.67 -0.1 4,029,494 + HP15_3803 0.72 -1.0 4,029,524 - HP15_3803 0.74 +0.6 4,029,603 - HP15_3803 0.81 +0.5 4,029,689 - HP15_3803 0.88 -1.1 4,029,779 + +0.8 4,029,834 - +0.8 4,029,853 - -1.5 4,029,858 + +0.3 4,029,876 - +1.3 4,029,883 + +1.2 4,029,911 - -0.1 4,029,921 - -0.6 4,030,158 + HP15_3804 0.15 +0.9 4,030,173 - HP15_3804 0.16 +1.3 4,030,182 - HP15_3804 0.17 -0.6 4,030,337 + HP15_3804 0.29 -0.4 4,030,497 + HP15_3804 0.41 -0.5 4,030,505 - HP15_3804 0.42 +1.0 4,030,537 - HP15_3804 0.45 +0.8 4,030,590 + HP15_3804 0.49 -0.5 4,030,673 + HP15_3804 0.55 -1.0 4,030,717 - HP15_3804 0.59 -0.5 4,030,744 + HP15_3804 0.61 -0.4 4,030,950 - HP15_3804 0.77 -0.6 4,031,019 - HP15_3804 0.82 -0.7 4,031,059 - HP15_3804 0.85 -0.8 4,031,091 + HP15_3804 0.88 -0.2 4,031,091 + HP15_3804 0.88 -0.3 4,031,116 + HP15_3804 0.90 -0.5 4,031,175 + +0.2 4,031,259 + +0.6 4,031,267 - -0.5 4,031,268 + +1.2 4,031,276 - +0.0 4,031,286 + -0.2 4,031,291 + -0.1 4,031,303 + HP15_3805 0.12 -0.3 4,031,303 + HP15_3805 0.12 -1.2 4,031,352 - HP15_3805 0.26 +0.0 4,031,352 - HP15_3805 0.26 -0.8 4,031,379 + HP15_3805 0.34 +0.7 4,031,382 - HP15_3805 0.35 +1.1 4,031,393 - HP15_3805 0.38 +0.8 4,031,467 + HP15_3805 0.60 -0.5 4,031,467 + HP15_3805 0.60 +1.1 4,031,512 + HP15_3805 0.73 +0.3 4,031,654 - -0.7 4,031,678 - -0.8 4,032,022 + HP15_3806 0.87 -0.2 4,032,022 + HP15_3806 0.87 -0.6 4,032,088 - +0.2
Or see this region's nucleotide sequence