Strain Fitness in Marinobacter adhaerens HP15 around HP15_3672

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3671 and HP15_3672 are separated by 2 nucleotidesHP15_3672 and HP15_3673 are separated by 206 nucleotides HP15_3671: HP15_3671 - sensory box/GGDEF family protein, at 3,868,565 to 3,870,502 _3671 HP15_3672: HP15_3672 - conserved hypothetical protein, secreted, at 3,870,505 to 3,871,014 _3672 HP15_3673: HP15_3673 - ferrichrome outer membrane transporter, at 3,871,221 to 3,873,329 _3673 Position (kb) 3870 3871 3872Strain fitness (log2 ratio) -1 0 1 2at 3869.532 kb on - strand, within HP15_3671at 3869.532 kb on - strand, within HP15_3671at 3869.585 kb on - strand, within HP15_3671at 3869.671 kb on - strand, within HP15_3671at 3869.688 kb on + strand, within HP15_3671at 3869.702 kb on - strand, within HP15_3671at 3869.755 kb on - strand, within HP15_3671at 3869.771 kb on - strand, within HP15_3671at 3869.868 kb on + strand, within HP15_3671at 3869.996 kb on - strand, within HP15_3671at 3870.133 kb on - strand, within HP15_3671at 3870.181 kb on - strand, within HP15_3671at 3870.181 kb on - strand, within HP15_3671at 3870.192 kb on + strand, within HP15_3671at 3870.207 kb on + strand, within HP15_3671at 3870.209 kb on + strand, within HP15_3671at 3870.217 kb on - strand, within HP15_3671at 3870.217 kb on - strand, within HP15_3671at 3870.217 kb on - strand, within HP15_3671at 3870.217 kb on - strand, within HP15_3671at 3870.231 kb on + strand, within HP15_3671at 3870.231 kb on + strand, within HP15_3671at 3870.239 kb on - strand, within HP15_3671at 3870.280 kb on - strand, within HP15_3671at 3870.280 kb on - strand, within HP15_3671at 3870.287 kb on - strand, within HP15_3671at 3870.374 kb on - strandat 3870.489 kb on + strandat 3870.489 kb on - strandat 3870.516 kb on - strandat 3870.567 kb on + strand, within HP15_3672at 3870.623 kb on + strand, within HP15_3672at 3870.623 kb on + strand, within HP15_3672at 3870.631 kb on - strand, within HP15_3672at 3870.631 kb on - strand, within HP15_3672at 3870.665 kb on + strand, within HP15_3672at 3870.842 kb on - strand, within HP15_3672at 3871.139 kb on + strandat 3871.153 kb on - strandat 3871.196 kb on - strandat 3871.289 kb on - strandat 3871.294 kb on + strandat 3871.302 kb on - strandat 3871.369 kb on + strandat 3871.377 kb on - strandat 3871.405 kb on + strandat 3871.466 kb on + strand, within HP15_3673at 3871.474 kb on - strand, within HP15_3673at 3871.534 kb on + strand, within HP15_3673at 3871.629 kb on + strand, within HP15_3673at 3871.736 kb on + strand, within HP15_3673at 3871.741 kb on + strand, within HP15_3673at 3871.749 kb on - strand, within HP15_3673at 3871.793 kb on + strand, within HP15_3673at 3871.801 kb on - strand, within HP15_3673at 3871.838 kb on + strand, within HP15_3673at 3872.004 kb on - strand, within HP15_3673

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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3,869,532 - HP15_3671 0.50 +2.4
3,869,532 - HP15_3671 0.50 -0.4
3,869,585 - HP15_3671 0.53 +0.2
3,869,671 - HP15_3671 0.57 -1.3
3,869,688 + HP15_3671 0.58 +0.7
3,869,702 - HP15_3671 0.59 +1.4
3,869,755 - HP15_3671 0.61 +1.0
3,869,771 - HP15_3671 0.62 +0.2
3,869,868 + HP15_3671 0.67 +0.9
3,869,996 - HP15_3671 0.74 -0.5
3,870,133 - HP15_3671 0.81 -0.8
3,870,181 - HP15_3671 0.83 +0.2
3,870,181 - HP15_3671 0.83 +0.2
3,870,192 + HP15_3671 0.84 +1.0
3,870,207 + HP15_3671 0.85 -0.5
3,870,209 + HP15_3671 0.85 +1.3
3,870,217 - HP15_3671 0.85 +0.0
3,870,217 - HP15_3671 0.85 -0.4
3,870,217 - HP15_3671 0.85 +0.3
3,870,217 - HP15_3671 0.85 +0.6
3,870,231 + HP15_3671 0.86 -0.6
3,870,231 + HP15_3671 0.86 +1.0
3,870,239 - HP15_3671 0.86 +1.0
3,870,280 - HP15_3671 0.88 +0.7
3,870,280 - HP15_3671 0.88 +0.4
3,870,287 - HP15_3671 0.89 -0.7
3,870,374 - +0.3
3,870,489 + -0.6
3,870,489 - -0.5
3,870,516 - -0.3
3,870,567 + HP15_3672 0.12 -1.2
3,870,623 + HP15_3672 0.23 -0.7
3,870,623 + HP15_3672 0.23 -0.2
3,870,631 - HP15_3672 0.25 -0.9
3,870,631 - HP15_3672 0.25 +0.2
3,870,665 + HP15_3672 0.31 -0.0
3,870,842 - HP15_3672 0.66 -0.7
3,871,139 + +0.5
3,871,153 - +0.4
3,871,196 - -0.1
3,871,289 - +0.7
3,871,294 + -1.1
3,871,302 - +1.6
3,871,369 + -1.0
3,871,377 - -0.5
3,871,405 + -0.9
3,871,466 + HP15_3673 0.12 -0.9
3,871,474 - HP15_3673 0.12 +0.8
3,871,534 + HP15_3673 0.15 -0.8
3,871,629 + HP15_3673 0.19 -0.3
3,871,736 + HP15_3673 0.24 +1.0
3,871,741 + HP15_3673 0.25 +0.7
3,871,749 - HP15_3673 0.25 +0.2
3,871,793 + HP15_3673 0.27 +0.3
3,871,801 - HP15_3673 0.28 -0.4
3,871,838 + HP15_3673 0.29 +1.6
3,872,004 - HP15_3673 0.37 -1.1

Or see this region's nucleotide sequence