Experiment: m.b. 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3671 and HP15_3672 are separated by 2 nucleotides HP15_3672 and HP15_3673 are separated by 206 nucleotides
HP15_3671: HP15_3671 - sensory box/GGDEF family protein, at 3,868,565 to 3,870,502
_3671
HP15_3672: HP15_3672 - conserved hypothetical protein, secreted, at 3,870,505 to 3,871,014
_3672
HP15_3673: HP15_3673 - ferrichrome outer membrane transporter, at 3,871,221 to 3,873,329
_3673
Position (kb)
3870
3871
3872 Strain fitness (log2 ratio)
-1
0
1
2 at 3869.532 kb on - strand, within HP15_3671 at 3869.532 kb on - strand, within HP15_3671 at 3869.585 kb on - strand, within HP15_3671 at 3869.671 kb on - strand, within HP15_3671 at 3869.688 kb on + strand, within HP15_3671 at 3869.702 kb on - strand, within HP15_3671 at 3869.755 kb on - strand, within HP15_3671 at 3869.771 kb on - strand, within HP15_3671 at 3869.868 kb on + strand, within HP15_3671 at 3869.996 kb on - strand, within HP15_3671 at 3870.133 kb on - strand, within HP15_3671 at 3870.181 kb on - strand, within HP15_3671 at 3870.181 kb on - strand, within HP15_3671 at 3870.192 kb on + strand, within HP15_3671 at 3870.207 kb on + strand, within HP15_3671 at 3870.209 kb on + strand, within HP15_3671 at 3870.217 kb on - strand, within HP15_3671 at 3870.217 kb on - strand, within HP15_3671 at 3870.217 kb on - strand, within HP15_3671 at 3870.217 kb on - strand, within HP15_3671 at 3870.231 kb on + strand, within HP15_3671 at 3870.231 kb on + strand, within HP15_3671 at 3870.239 kb on - strand, within HP15_3671 at 3870.280 kb on - strand, within HP15_3671 at 3870.280 kb on - strand, within HP15_3671 at 3870.287 kb on - strand, within HP15_3671 at 3870.374 kb on - strand at 3870.489 kb on + strand at 3870.489 kb on - strand at 3870.516 kb on - strand at 3870.567 kb on + strand, within HP15_3672 at 3870.623 kb on + strand, within HP15_3672 at 3870.623 kb on + strand, within HP15_3672 at 3870.631 kb on - strand, within HP15_3672 at 3870.631 kb on - strand, within HP15_3672 at 3870.665 kb on + strand, within HP15_3672 at 3870.842 kb on - strand, within HP15_3672 at 3871.139 kb on + strand at 3871.153 kb on - strand at 3871.196 kb on - strand at 3871.289 kb on - strand at 3871.294 kb on + strand at 3871.302 kb on - strand at 3871.369 kb on + strand at 3871.377 kb on - strand at 3871.405 kb on + strand at 3871.466 kb on + strand, within HP15_3673 at 3871.474 kb on - strand, within HP15_3673 at 3871.534 kb on + strand, within HP15_3673 at 3871.629 kb on + strand, within HP15_3673 at 3871.736 kb on + strand, within HP15_3673 at 3871.741 kb on + strand, within HP15_3673 at 3871.749 kb on - strand, within HP15_3673 at 3871.793 kb on + strand, within HP15_3673 at 3871.801 kb on - strand, within HP15_3673 at 3871.838 kb on + strand, within HP15_3673 at 3872.004 kb on - strand, within HP15_3673
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 37C remove 3,869,532 - HP15_3671 0.50 +2.4 3,869,532 - HP15_3671 0.50 -0.4 3,869,585 - HP15_3671 0.53 +0.2 3,869,671 - HP15_3671 0.57 -1.3 3,869,688 + HP15_3671 0.58 +0.7 3,869,702 - HP15_3671 0.59 +1.4 3,869,755 - HP15_3671 0.61 +1.0 3,869,771 - HP15_3671 0.62 +0.2 3,869,868 + HP15_3671 0.67 +0.9 3,869,996 - HP15_3671 0.74 -0.5 3,870,133 - HP15_3671 0.81 -0.8 3,870,181 - HP15_3671 0.83 +0.2 3,870,181 - HP15_3671 0.83 +0.2 3,870,192 + HP15_3671 0.84 +1.0 3,870,207 + HP15_3671 0.85 -0.5 3,870,209 + HP15_3671 0.85 +1.3 3,870,217 - HP15_3671 0.85 +0.0 3,870,217 - HP15_3671 0.85 -0.4 3,870,217 - HP15_3671 0.85 +0.3 3,870,217 - HP15_3671 0.85 +0.6 3,870,231 + HP15_3671 0.86 -0.6 3,870,231 + HP15_3671 0.86 +1.0 3,870,239 - HP15_3671 0.86 +1.0 3,870,280 - HP15_3671 0.88 +0.7 3,870,280 - HP15_3671 0.88 +0.4 3,870,287 - HP15_3671 0.89 -0.7 3,870,374 - +0.3 3,870,489 + -0.6 3,870,489 - -0.5 3,870,516 - -0.3 3,870,567 + HP15_3672 0.12 -1.2 3,870,623 + HP15_3672 0.23 -0.7 3,870,623 + HP15_3672 0.23 -0.2 3,870,631 - HP15_3672 0.25 -0.9 3,870,631 - HP15_3672 0.25 +0.2 3,870,665 + HP15_3672 0.31 -0.0 3,870,842 - HP15_3672 0.66 -0.7 3,871,139 + +0.5 3,871,153 - +0.4 3,871,196 - -0.1 3,871,289 - +0.7 3,871,294 + -1.1 3,871,302 - +1.6 3,871,369 + -1.0 3,871,377 - -0.5 3,871,405 + -0.9 3,871,466 + HP15_3673 0.12 -0.9 3,871,474 - HP15_3673 0.12 +0.8 3,871,534 + HP15_3673 0.15 -0.8 3,871,629 + HP15_3673 0.19 -0.3 3,871,736 + HP15_3673 0.24 +1.0 3,871,741 + HP15_3673 0.25 +0.7 3,871,749 - HP15_3673 0.25 +0.2 3,871,793 + HP15_3673 0.27 +0.3 3,871,801 - HP15_3673 0.28 -0.4 3,871,838 + HP15_3673 0.29 +1.6 3,872,004 - HP15_3673 0.37 -1.1
Or see this region's nucleotide sequence