Experiment: m.b. 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2979 and HP15_2980 are separated by 165 nucleotides HP15_2980 and HP15_2981 are separated by 11 nucleotides
HP15_2979: HP15_2979 - NnrS family protein, at 3,122,027 to 3,123,211
_2979
HP15_2980: HP15_2980 - 3-hydroxydecanoyl-ACP dehydratase, at 3,123,377 to 3,123,886
_2980
HP15_2981: HP15_2981 - 3-oxoacyl-(acyl-carrier-protein) synthase I, at 3,123,898 to 3,125,109
_2981
Position (kb)
3123
3124 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3122.394 kb on - strand, within HP15_2979 at 3122.505 kb on - strand, within HP15_2979 at 3122.548 kb on - strand, within HP15_2979 at 3122.548 kb on - strand, within HP15_2979 at 3122.560 kb on + strand, within HP15_2979 at 3122.560 kb on + strand, within HP15_2979 at 3122.561 kb on - strand, within HP15_2979 at 3122.568 kb on - strand, within HP15_2979 at 3122.568 kb on - strand, within HP15_2979 at 3122.578 kb on + strand, within HP15_2979 at 3122.581 kb on - strand, within HP15_2979 at 3122.581 kb on - strand, within HP15_2979 at 3122.586 kb on - strand, within HP15_2979 at 3122.611 kb on + strand, within HP15_2979 at 3122.625 kb on + strand, within HP15_2979 at 3122.657 kb on + strand, within HP15_2979 at 3122.670 kb on - strand, within HP15_2979 at 3122.687 kb on + strand, within HP15_2979 at 3122.715 kb on + strand, within HP15_2979 at 3122.767 kb on - strand, within HP15_2979 at 3122.848 kb on + strand, within HP15_2979 at 3123.029 kb on + strand, within HP15_2979 at 3123.127 kb on + strand at 3123.127 kb on + strand at 3123.155 kb on - strand at 3123.183 kb on + strand at 3124.025 kb on - strand, within HP15_2981 at 3124.113 kb on + strand, within HP15_2981 at 3124.114 kb on + strand, within HP15_2981 at 3124.142 kb on - strand, within HP15_2981 at 3124.173 kb on + strand, within HP15_2981 at 3124.377 kb on - strand, within HP15_2981 at 3124.738 kb on - strand, within HP15_2981 at 3124.790 kb on + strand, within HP15_2981
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 37C remove 3,122,394 - HP15_2979 0.31 +0.2 3,122,505 - HP15_2979 0.40 -0.1 3,122,548 - HP15_2979 0.44 +1.5 3,122,548 - HP15_2979 0.44 +1.4 3,122,560 + HP15_2979 0.45 +0.7 3,122,560 + HP15_2979 0.45 -0.1 3,122,561 - HP15_2979 0.45 +0.0 3,122,568 - HP15_2979 0.46 +1.0 3,122,568 - HP15_2979 0.46 +0.3 3,122,578 + HP15_2979 0.46 +1.4 3,122,581 - HP15_2979 0.47 -1.5 3,122,581 - HP15_2979 0.47 +0.8 3,122,586 - HP15_2979 0.47 -0.4 3,122,611 + HP15_2979 0.49 -0.5 3,122,625 + HP15_2979 0.50 -0.7 3,122,657 + HP15_2979 0.53 +1.0 3,122,670 - HP15_2979 0.54 +1.2 3,122,687 + HP15_2979 0.56 +0.8 3,122,715 + HP15_2979 0.58 -0.2 3,122,767 - HP15_2979 0.62 -0.4 3,122,848 + HP15_2979 0.69 +0.0 3,123,029 + HP15_2979 0.85 -0.6 3,123,127 + +0.8 3,123,127 + -0.3 3,123,155 - +1.1 3,123,183 + -0.4 3,124,025 - HP15_2981 0.10 -1.7 3,124,113 + HP15_2981 0.18 +0.4 3,124,114 + HP15_2981 0.18 -2.9 3,124,142 - HP15_2981 0.20 -0.6 3,124,173 + HP15_2981 0.23 -1.2 3,124,377 - HP15_2981 0.40 -1.9 3,124,738 - HP15_2981 0.69 -1.9 3,124,790 + HP15_2981 0.74 -2.5
Or see this region's nucleotide sequence