Strain Fitness in Marinobacter adhaerens HP15 around HP15_2533

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2532 and HP15_2533 are separated by 58 nucleotidesHP15_2533 and HP15_2534 are separated by 18 nucleotidesHP15_2534 and HP15_2535 are separated by 21 nucleotidesHP15_2535 and HP15_2536 are separated by 106 nucleotides HP15_2532: HP15_2532 - RND type efflux pump involved in aminoglycoside resistance (AdeT), at 2,676,868 to 2,677,878 _2532 HP15_2533: HP15_2533 - conserved hypothetical protein, secreted, at 2,677,937 to 2,679,001 _2533 HP15_2534: HP15_2534 - hypothetical protein, at 2,679,020 to 2,679,184 _2534 HP15_2535: HP15_2535 - transcriptional regulator, TetR family, at 2,679,206 to 2,679,865 _2535 HP15_2536: HP15_2536 - protein containing DUF1446, at 2,679,972 to 2,681,768 _2536 Position (kb) 2677 2678 2679 2680Strain fitness (log2 ratio) -1 0 1 2at 2676.973 kb on + strand, within HP15_2532at 2676.973 kb on + strand, within HP15_2532at 2676.981 kb on - strand, within HP15_2532at 2676.981 kb on - strand, within HP15_2532at 2676.990 kb on + strand, within HP15_2532at 2677.097 kb on + strand, within HP15_2532at 2677.210 kb on + strand, within HP15_2532at 2677.218 kb on - strand, within HP15_2532at 2677.238 kb on + strand, within HP15_2532at 2677.246 kb on - strand, within HP15_2532at 2677.246 kb on - strand, within HP15_2532at 2677.343 kb on + strand, within HP15_2532at 2677.466 kb on + strand, within HP15_2532at 2677.489 kb on - strand, within HP15_2532at 2677.491 kb on + strand, within HP15_2532at 2677.531 kb on - strand, within HP15_2532at 2677.589 kb on + strand, within HP15_2532at 2677.697 kb on + strand, within HP15_2532at 2677.808 kb on + strandat 2677.826 kb on - strandat 2678.134 kb on + strand, within HP15_2533at 2678.257 kb on - strand, within HP15_2533at 2678.521 kb on - strand, within HP15_2533at 2678.777 kb on - strand, within HP15_2533at 2678.790 kb on + strand, within HP15_2533at 2678.880 kb on - strand, within HP15_2533at 2678.880 kb on - strand, within HP15_2533at 2678.954 kb on - strandat 2678.954 kb on - strandat 2679.056 kb on - strand, within HP15_2534at 2679.150 kb on + strand, within HP15_2534at 2679.250 kb on + strandat 2679.250 kb on + strandat 2679.278 kb on - strand, within HP15_2535at 2679.306 kb on + strand, within HP15_2535at 2679.314 kb on - strand, within HP15_2535at 2679.551 kb on + strand, within HP15_2535at 2679.551 kb on + strand, within HP15_2535at 2679.559 kb on - strand, within HP15_2535at 2679.569 kb on - strand, within HP15_2535at 2679.576 kb on + strand, within HP15_2535at 2679.576 kb on + strand, within HP15_2535at 2679.823 kb on - strandat 2679.983 kb on + strandat 2679.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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2,676,973 + HP15_2532 0.10 -0.3
2,676,973 + HP15_2532 0.10 +0.2
2,676,981 - HP15_2532 0.11 -0.1
2,676,981 - HP15_2532 0.11 +0.1
2,676,990 + HP15_2532 0.12 -0.3
2,677,097 + HP15_2532 0.23 -0.1
2,677,210 + HP15_2532 0.34 -0.7
2,677,218 - HP15_2532 0.35 -1.0
2,677,238 + HP15_2532 0.37 -0.7
2,677,246 - HP15_2532 0.37 -0.6
2,677,246 - HP15_2532 0.37 -0.5
2,677,343 + HP15_2532 0.47 -0.2
2,677,466 + HP15_2532 0.59 -0.4
2,677,489 - HP15_2532 0.61 +1.0
2,677,491 + HP15_2532 0.62 +1.4
2,677,531 - HP15_2532 0.66 -0.4
2,677,589 + HP15_2532 0.71 -1.1
2,677,697 + HP15_2532 0.82 +1.0
2,677,808 + +1.0
2,677,826 - +0.2
2,678,134 + HP15_2533 0.18 -0.7
2,678,257 - HP15_2533 0.30 +0.1
2,678,521 - HP15_2533 0.55 +1.1
2,678,777 - HP15_2533 0.79 +1.9
2,678,790 + HP15_2533 0.80 +1.3
2,678,880 - HP15_2533 0.89 -0.0
2,678,880 - HP15_2533 0.89 -0.3
2,678,954 - +0.5
2,678,954 - +0.0
2,679,056 - HP15_2534 0.22 +0.7
2,679,150 + HP15_2534 0.79 -0.6
2,679,250 + -1.2
2,679,250 + +0.1
2,679,278 - HP15_2535 0.11 -0.3
2,679,306 + HP15_2535 0.15 -1.0
2,679,314 - HP15_2535 0.16 -0.5
2,679,551 + HP15_2535 0.52 -0.7
2,679,551 + HP15_2535 0.52 -0.1
2,679,559 - HP15_2535 0.53 -0.7
2,679,569 - HP15_2535 0.55 -0.3
2,679,576 + HP15_2535 0.56 -0.6
2,679,576 + HP15_2535 0.56 -0.8
2,679,823 - -0.1
2,679,983 + -1.4
2,679,991 - -0.1

Or see this region's nucleotide sequence