Experiment: m.b. 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_238 and HP15_239 are separated by 8 nucleotides HP15_239 and HP15_240 overlap by 20 nucleotides HP15_240 and HP15_241 are separated by 92 nucleotides HP15_241 and HP15_242 are separated by 29 nucleotides
HP15_238: HP15_238 - protein of unknown function, HemX, at 223,545 to 224,669
_238
HP15_239: HP15_239 - uroporphyrinogen-III synthase, at 224,678 to 225,487
_239
HP15_240: HP15_240 - porphobilinogen deaminase, at 225,468 to 226,409
_240
HP15_241: HP15_241 - alginate biosynthesis regulatory protein AlgR-like protein, at 226,502 to 227,251
_241
HP15_242: HP15_242 - histidine kinase internal region, at 227,281 to 228,321
_242
Position (kb) 225
226
227 Strain fitness (log2 ratio) -1
0
1 at 224.523 kb on - strand, within HP15_238 at 226.527 kb on - strand at 226.605 kb on - strand, within HP15_241 at 226.630 kb on + strand, within HP15_241 at 226.655 kb on + strand, within HP15_241 at 226.665 kb on + strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.775 kb on + strand, within HP15_241 at 226.814 kb on - strand, within HP15_241 at 226.849 kb on - strand, within HP15_241 at 226.849 kb on - strand, within HP15_241 at 226.890 kb on + strand, within HP15_241 at 226.902 kb on + strand, within HP15_241 at 226.909 kb on - strand, within HP15_241 at 226.935 kb on + strand, within HP15_241 at 226.945 kb on + strand, within HP15_241 at 227.247 kb on + strand at 227.271 kb on + strand at 227.271 kb on + strand at 227.362 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 37C remove 224,523 - HP15_238 0.87 -0.6 226,527 - +0.8 226,605 - HP15_241 0.14 -1.1 226,630 + HP15_241 0.17 -0.2 226,655 + HP15_241 0.20 -0.5 226,665 + HP15_241 0.22 -0.5 226,673 - HP15_241 0.23 +0.3 226,673 - HP15_241 0.23 +0.3 226,673 - HP15_241 0.23 -0.7 226,775 + HP15_241 0.36 +0.6 226,814 - HP15_241 0.42 -1.3 226,849 - HP15_241 0.46 +1.1 226,849 - HP15_241 0.46 +0.1 226,890 + HP15_241 0.52 -0.5 226,902 + HP15_241 0.53 +0.3 226,909 - HP15_241 0.54 +0.2 226,935 + HP15_241 0.58 +0.2 226,945 + HP15_241 0.59 +0.3 227,247 + -0.1 227,271 + +0.9 227,271 + -0.3 227,362 + +0.9
Or see this region's nucleotide sequence