Strain Fitness in Marinobacter adhaerens HP15 around HP15_1926

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1925 and HP15_1926 are separated by 219 nucleotidesHP15_1926 and HP15_1927 are separated by 23 nucleotides HP15_1925: HP15_1925 - undecaprenyl-phosphate galactosephosphotransferase, at 2,041,194 to 2,042,552 _1925 HP15_1926: HP15_1926 - PEP-CTERM locus, polysaccharide deactylase, at 2,042,772 to 2,043,773 _1926 HP15_1927: HP15_1927 - AAA ATPase, at 2,043,797 to 2,044,846 _1927 Position (kb) 2042 2043 2044Strain fitness (log2 ratio) -2 -1 0 1 2at 2041.798 kb on - strand, within HP15_1925at 2041.798 kb on - strand, within HP15_1925at 2041.886 kb on + strand, within HP15_1925at 2041.938 kb on + strand, within HP15_1925at 2041.946 kb on - strand, within HP15_1925at 2042.062 kb on - strand, within HP15_1925at 2042.101 kb on + strand, within HP15_1925at 2042.111 kb on + strand, within HP15_1925at 2042.274 kb on - strand, within HP15_1925at 2042.284 kb on + strand, within HP15_1925at 2042.329 kb on - strand, within HP15_1925at 2042.356 kb on + strand, within HP15_1925at 2042.415 kb on + strand, within HP15_1925at 2042.415 kb on + strand, within HP15_1925at 2042.543 kb on - strandat 2042.604 kb on + strandat 2042.663 kb on + strandat 2042.684 kb on + strandat 2042.684 kb on + strandat 2042.694 kb on + strandat 2042.702 kb on - strandat 2042.799 kb on - strandat 2042.919 kb on + strand, within HP15_1926at 2042.956 kb on + strand, within HP15_1926at 2043.212 kb on + strand, within HP15_1926at 2043.229 kb on - strand, within HP15_1926at 2043.449 kb on - strand, within HP15_1926at 2043.479 kb on + strand, within HP15_1926at 2043.480 kb on - strand, within HP15_1926at 2043.648 kb on - strand, within HP15_1926at 2043.650 kb on + strand, within HP15_1926at 2043.650 kb on + strand, within HP15_1926at 2043.658 kb on - strand, within HP15_1926at 2043.717 kb on - strandat 2043.801 kb on + strandat 2044.002 kb on - strand, within HP15_1927at 2044.013 kb on - strand, within HP15_1927at 2044.058 kb on + strand, within HP15_1927at 2044.067 kb on - strand, within HP15_1927at 2044.117 kb on - strand, within HP15_1927at 2044.229 kb on - strand, within HP15_1927at 2044.274 kb on - strand, within HP15_1927at 2044.292 kb on - strand, within HP15_1927at 2044.359 kb on + strand, within HP15_1927at 2044.377 kb on + strand, within HP15_1927at 2044.438 kb on + strand, within HP15_1927at 2044.659 kb on + strand, within HP15_1927at 2044.677 kb on - strand, within HP15_1927

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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2,041,798 - HP15_1925 0.44 +0.8
2,041,798 - HP15_1925 0.44 -0.4
2,041,886 + HP15_1925 0.51 -0.3
2,041,938 + HP15_1925 0.55 +1.0
2,041,946 - HP15_1925 0.55 +1.8
2,042,062 - HP15_1925 0.64 +0.0
2,042,101 + HP15_1925 0.67 -0.1
2,042,111 + HP15_1925 0.67 -0.4
2,042,274 - HP15_1925 0.79 -0.6
2,042,284 + HP15_1925 0.80 +0.9
2,042,329 - HP15_1925 0.84 -0.4
2,042,356 + HP15_1925 0.86 +0.7
2,042,415 + HP15_1925 0.90 +0.5
2,042,415 + HP15_1925 0.90 -0.7
2,042,543 - +0.4
2,042,604 + +1.2
2,042,663 + -0.2
2,042,684 + -0.4
2,042,684 + -0.6
2,042,694 + -0.2
2,042,702 - -0.2
2,042,799 - +0.8
2,042,919 + HP15_1926 0.15 -0.3
2,042,956 + HP15_1926 0.18 +0.6
2,043,212 + HP15_1926 0.44 -0.8
2,043,229 - HP15_1926 0.46 -1.1
2,043,449 - HP15_1926 0.68 +0.4
2,043,479 + HP15_1926 0.71 -0.7
2,043,480 - HP15_1926 0.71 -0.0
2,043,648 - HP15_1926 0.87 +1.0
2,043,650 + HP15_1926 0.88 -0.9
2,043,650 + HP15_1926 0.88 -0.8
2,043,658 - HP15_1926 0.88 +0.8
2,043,717 - +0.7
2,043,801 + +0.6
2,044,002 - HP15_1927 0.20 -0.2
2,044,013 - HP15_1927 0.21 -0.6
2,044,058 + HP15_1927 0.25 -0.3
2,044,067 - HP15_1927 0.26 -0.6
2,044,117 - HP15_1927 0.30 -0.6
2,044,229 - HP15_1927 0.41 +1.0
2,044,274 - HP15_1927 0.45 -0.3
2,044,292 - HP15_1927 0.47 -2.0
2,044,359 + HP15_1927 0.54 -0.0
2,044,377 + HP15_1927 0.55 +0.0
2,044,438 + HP15_1927 0.61 -1.4
2,044,659 + HP15_1927 0.82 +0.2
2,044,677 - HP15_1927 0.84 -0.2

Or see this region's nucleotide sequence