Strain Fitness in Marinobacter adhaerens HP15 around HP15_1657

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1655 and HP15_1656 are separated by 26 nucleotidesHP15_1656 and HP15_1657 overlap by 14 nucleotidesHP15_1657 and HP15_1658 are separated by 30 nucleotidesHP15_1658 and HP15_1659 are separated by 342 nucleotidesHP15_1659 and HP15_1660 are separated by 16 nucleotides HP15_1655: HP15_1655 - transcriptional regulator, TetR family, at 1,750,916 to 1,751,485 _1655 HP15_1656: HP15_1656 - dihydrolipoamide dehydrogenase-like protein, at 1,751,512 to 1,751,757 _1656 HP15_1657: HP15_1657 - dihydrolipoamide dehydrogenase, at 1,751,744 to 1,753,165 _1657 HP15_1658: HP15_1658 - glutaredoxin-like protein, at 1,753,196 to 1,753,408 _1658 HP15_1659: HP15_1659 - hypothetical protein, at 1,753,751 to 1,753,873 _1659 HP15_1660: HP15_1660 - hypothetical protein, at 1,753,890 to 1,754,024 _1660 Position (kb) 1751 1752 1753 1754Strain fitness (log2 ratio) -2 -1 0 1at 1750.802 kb on + strandat 1750.802 kb on + strandat 1750.802 kb on + strandat 1750.802 kb on + strandat 1750.810 kb on - strandat 1750.891 kb on - strandat 1751.058 kb on + strand, within HP15_1655at 1751.351 kb on - strand, within HP15_1655at 1751.438 kb on + strandat 1751.541 kb on + strand, within HP15_1656at 1751.582 kb on - strand, within HP15_1656at 1751.614 kb on + strand, within HP15_1656at 1751.673 kb on - strand, within HP15_1656at 1751.867 kb on - strandat 1751.872 kb on + strandat 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.892 kb on + strand, within HP15_1657at 1751.898 kb on + strand, within HP15_1657at 1751.900 kb on - strand, within HP15_1657at 1751.900 kb on - strand, within HP15_1657at 1751.900 kb on - strand, within HP15_1657at 1751.906 kb on - strand, within HP15_1657at 1751.963 kb on + strand, within HP15_1657at 1751.963 kb on + strand, within HP15_1657at 1751.971 kb on - strand, within HP15_1657at 1751.987 kb on - strand, within HP15_1657at 1752.130 kb on - strand, within HP15_1657at 1752.266 kb on + strand, within HP15_1657at 1752.274 kb on - strand, within HP15_1657at 1752.376 kb on + strand, within HP15_1657at 1752.430 kb on + strand, within HP15_1657at 1752.651 kb on - strand, within HP15_1657at 1752.807 kb on + strand, within HP15_1657at 1752.840 kb on - strand, within HP15_1657at 1752.897 kb on + strand, within HP15_1657at 1752.954 kb on - strand, within HP15_1657at 1753.042 kb on - strandat 1753.044 kb on - strandat 1753.059 kb on + strandat 1753.079 kb on + strandat 1753.152 kb on - strandat 1753.211 kb on - strandat 1753.353 kb on - strand, within HP15_1658at 1753.462 kb on + strandat 1753.536 kb on + strandat 1753.749 kb on + strandat 1753.858 kb on + strand, within HP15_1659at 1753.858 kb on + strand, within HP15_1659at 1753.984 kb on - strand, within HP15_1660at 1753.994 kb on - strand, within HP15_1660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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1,750,802 + +0.8
1,750,802 + +0.6
1,750,802 + -0.1
1,750,802 + +0.2
1,750,810 - +0.4
1,750,891 - -0.7
1,751,058 + HP15_1655 0.25 -2.5
1,751,351 - HP15_1655 0.76 -1.3
1,751,438 + -1.8
1,751,541 + HP15_1656 0.12 -0.4
1,751,582 - HP15_1656 0.28 -0.8
1,751,614 + HP15_1656 0.41 +0.2
1,751,673 - HP15_1656 0.65 +0.6
1,751,867 - -0.0
1,751,872 + -1.1
1,751,892 + HP15_1657 0.10 +1.6
1,751,892 + HP15_1657 0.10 -0.3
1,751,892 + HP15_1657 0.10 -0.4
1,751,892 + HP15_1657 0.10 -0.2
1,751,892 + HP15_1657 0.10 -0.2
1,751,892 + HP15_1657 0.10 -0.5
1,751,898 + HP15_1657 0.11 -1.1
1,751,900 - HP15_1657 0.11 +0.4
1,751,900 - HP15_1657 0.11 -1.5
1,751,900 - HP15_1657 0.11 -0.2
1,751,906 - HP15_1657 0.11 -1.1
1,751,963 + HP15_1657 0.15 -0.2
1,751,963 + HP15_1657 0.15 -1.4
1,751,971 - HP15_1657 0.16 -0.7
1,751,987 - HP15_1657 0.17 -0.1
1,752,130 - HP15_1657 0.27 -1.8
1,752,266 + HP15_1657 0.37 -0.6
1,752,274 - HP15_1657 0.37 +0.6
1,752,376 + HP15_1657 0.44 +0.5
1,752,430 + HP15_1657 0.48 -0.6
1,752,651 - HP15_1657 0.64 +0.5
1,752,807 + HP15_1657 0.75 +1.0
1,752,840 - HP15_1657 0.77 +0.8
1,752,897 + HP15_1657 0.81 +0.1
1,752,954 - HP15_1657 0.85 -0.6
1,753,042 - -1.1
1,753,044 - -0.1
1,753,059 + +1.5
1,753,079 + +0.6
1,753,152 - +0.0
1,753,211 - +1.0
1,753,353 - HP15_1658 0.74 +0.8
1,753,462 + -1.1
1,753,536 + +1.1
1,753,749 + +1.5
1,753,858 + HP15_1659 0.87 +0.6
1,753,858 + HP15_1659 0.87 +0.4
1,753,984 - HP15_1660 0.70 -0.3
1,753,994 - HP15_1660 0.77 +1.2

Or see this region's nucleotide sequence