Strain Fitness in Marinobacter adhaerens HP15 around HP15_136

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_135 and HP15_136 are separated by 75 nucleotidesHP15_136 and HP15_137 are separated by 57 nucleotidesHP15_137 and HP15_138 are separated by 45 nucleotides HP15_135: HP15_135 - von Willebrand factor, type A-like protein, at 141,139 to 142,911 _135 HP15_136: HP15_136 - conserved hypothetical protein, at 142,987 to 143,280 _136 HP15_137: HP15_137 - hypothetical protein, at 143,338 to 143,526 _137 HP15_138: HP15_138 - protein containing Phage P4 alpha, zinc-binding domain, at 143,572 to 144,687 _138 Position (kb) 142 143 144Strain fitness (log2 ratio) -2 -1 0 1at 141.987 kb on - strand, within HP15_135at 141.987 kb on - strand, within HP15_135at 141.987 kb on - strand, within HP15_135at 141.987 kb on - strand, within HP15_135at 142.055 kb on + strand, within HP15_135at 142.055 kb on + strand, within HP15_135at 142.065 kb on + strand, within HP15_135at 142.083 kb on - strand, within HP15_135at 142.089 kb on + strand, within HP15_135at 142.136 kb on + strand, within HP15_135at 142.136 kb on + strand, within HP15_135at 142.180 kb on + strand, within HP15_135at 142.276 kb on - strand, within HP15_135at 142.336 kb on + strand, within HP15_135at 142.398 kb on + strand, within HP15_135at 142.542 kb on - strand, within HP15_135at 142.633 kb on + strand, within HP15_135at 142.638 kb on + strand, within HP15_135at 142.658 kb on - strand, within HP15_135at 142.687 kb on - strand, within HP15_135at 142.806 kb on - strandat 142.845 kb on - strandat 142.847 kb on + strandat 143.020 kb on + strand, within HP15_136at 143.032 kb on + strand, within HP15_136at 143.032 kb on + strand, within HP15_136at 143.212 kb on - strand, within HP15_136at 143.227 kb on - strand, within HP15_136at 143.251 kb on + strandat 143.295 kb on + strandat 143.302 kb on + strandat 143.303 kb on - strandat 143.310 kb on + strandat 143.310 kb on - strandat 143.327 kb on + strandat 143.330 kb on - strandat 143.336 kb on + strandat 143.439 kb on + strand, within HP15_137at 143.520 kb on - strandat 143.562 kb on + strandat 143.564 kb on + strandat 143.569 kb on + strandat 143.577 kb on - strandat 143.593 kb on + strandat 143.593 kb on + strandat 143.601 kb on - strandat 143.601 kb on - strandat 143.658 kb on + strandat 143.677 kb on - strandat 143.688 kb on + strand, within HP15_138at 143.688 kb on - strand, within HP15_138at 143.710 kb on - strand, within HP15_138at 143.747 kb on - strand, within HP15_138at 143.954 kb on + strand, within HP15_138at 143.954 kb on + strand, within HP15_138at 143.967 kb on + strand, within HP15_138at 143.975 kb on - strand, within HP15_138at 143.980 kb on - strand, within HP15_138at 143.990 kb on - strand, within HP15_138at 143.990 kb on - strand, within HP15_138at 144.052 kb on + strand, within HP15_138at 144.067 kb on - strand, within HP15_138

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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141,987 - HP15_135 0.48 -0.3
141,987 - HP15_135 0.48 -0.2
141,987 - HP15_135 0.48 +0.7
141,987 - HP15_135 0.48 +1.4
142,055 + HP15_135 0.52 -0.8
142,055 + HP15_135 0.52 -0.6
142,065 + HP15_135 0.52 +0.9
142,083 - HP15_135 0.53 -0.3
142,089 + HP15_135 0.54 -0.4
142,136 + HP15_135 0.56 +0.2
142,136 + HP15_135 0.56 -0.1
142,180 + HP15_135 0.59 -0.1
142,276 - HP15_135 0.64 +1.1
142,336 + HP15_135 0.68 +1.1
142,398 + HP15_135 0.71 -0.9
142,542 - HP15_135 0.79 +1.0
142,633 + HP15_135 0.84 -1.8
142,638 + HP15_135 0.85 -0.6
142,658 - HP15_135 0.86 +0.8
142,687 - HP15_135 0.87 -0.7
142,806 - +1.1
142,845 - -0.7
142,847 + +0.6
143,020 + HP15_136 0.11 -0.2
143,032 + HP15_136 0.15 -0.7
143,032 + HP15_136 0.15 -1.0
143,212 - HP15_136 0.77 -0.3
143,227 - HP15_136 0.82 -0.7
143,251 + -0.4
143,295 + +0.1
143,302 + -0.7
143,303 - -0.7
143,310 + +1.3
143,310 - -0.3
143,327 + -0.1
143,330 - -0.8
143,336 + -0.2
143,439 + HP15_137 0.53 +0.2
143,520 - +0.6
143,562 + -0.6
143,564 + +0.4
143,569 + +0.8
143,577 - -0.4
143,593 + +0.9
143,593 + -0.1
143,601 - +0.0
143,601 - +0.5
143,658 + -0.7
143,677 - +0.9
143,688 + HP15_138 0.10 -0.1
143,688 - HP15_138 0.10 -1.1
143,710 - HP15_138 0.12 +0.0
143,747 - HP15_138 0.16 -0.1
143,954 + HP15_138 0.34 -0.3
143,954 + HP15_138 0.34 +1.0
143,967 + HP15_138 0.35 +0.6
143,975 - HP15_138 0.36 -0.7
143,980 - HP15_138 0.37 +0.1
143,990 - HP15_138 0.37 +0.7
143,990 - HP15_138 0.37 -0.4
144,052 + HP15_138 0.43 -0.4
144,067 - HP15_138 0.44 -0.4

Or see this region's nucleotide sequence