Experiment: m.b. 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1317 and HP15_1318 are separated by 29 nucleotides HP15_1318 and HP15_1319 are separated by 141 nucleotides HP15_1319 and HP15_1320 are separated by 105 nucleotides
HP15_1317: HP15_1317 - permease YjgP/YjgQ family protein, at 1,379,230 to 1,380,267
_1317
HP15_1318: HP15_1318 - RDD domain containing protein, at 1,380,297 to 1,380,836
_1318
HP15_1319: HP15_1319 - alanyl-tRNA synthetase, class IIc, at 1,380,978 to 1,383,608
_1319
HP15_1320: HP15_1320 - aspartate kinase: aspartate kinase, monofunctional class, at 1,383,714 to 1,384,952
_1320
Position (kb) 1380
1381
1382
1383
1384 Strain fitness (log2 ratio) -2
-1
0
1 at 1380.367 kb on + strand, within HP15_1318 at 1380.406 kb on + strand, within HP15_1318 at 1380.494 kb on - strand, within HP15_1318 at 1380.607 kb on - strand, within HP15_1318 at 1380.607 kb on - strand, within HP15_1318 at 1380.686 kb on - strand, within HP15_1318 at 1380.737 kb on + strand, within HP15_1318 at 1380.801 kb on + strand at 1380.809 kb on - strand at 1380.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 37C remove 1,380,367 + HP15_1318 0.13 -2.4 1,380,406 + HP15_1318 0.20 -2.4 1,380,494 - HP15_1318 0.36 -1.1 1,380,607 - HP15_1318 0.57 +0.3 1,380,607 - HP15_1318 0.57 -0.3 1,380,686 - HP15_1318 0.72 -2.0 1,380,737 + HP15_1318 0.81 -1.6 1,380,801 + -1.2 1,380,809 - -1.4 1,380,851 + -1.4
Or see this region's nucleotide sequence