Strain Fitness in Marinobacter adhaerens HP15 around HP15_116

Experiment: m.b. 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_115 and HP15_116 are separated by 87 nucleotidesHP15_116 and HP15_117 are separated by 302 nucleotidesHP15_117 and HP15_118 are separated by 59 nucleotides HP15_115: HP15_115 - heavy metal efflux pump, CzcA family, at 122,825 to 126,022 _115 HP15_116: HP15_116 - two-component sensor, at 126,110 to 127,477 _116 HP15_117: HP15_117 - conserved hypothetical protein, secreted, at 127,780 to 128,010 _117 HP15_118: HP15_118 - hypothetical protein, at 128,070 to 128,192 _118 Position (kb) 126 127 128Strain fitness (log2 ratio) -1 0 1at 125.156 kb on + strand, within HP15_115at 125.160 kb on - strand, within HP15_115at 125.164 kb on - strand, within HP15_115at 125.193 kb on + strand, within HP15_115at 125.208 kb on + strand, within HP15_115at 125.224 kb on + strand, within HP15_115at 125.292 kb on + strand, within HP15_115at 125.293 kb on + strand, within HP15_115at 125.301 kb on - strand, within HP15_115at 125.368 kb on - strand, within HP15_115at 125.390 kb on + strand, within HP15_115at 125.390 kb on + strand, within HP15_115at 125.391 kb on - strand, within HP15_115at 125.398 kb on - strand, within HP15_115at 125.426 kb on + strand, within HP15_115at 125.510 kb on + strand, within HP15_115at 125.651 kb on + strand, within HP15_115at 125.715 kb on - strandat 125.794 kb on + strandat 125.794 kb on + strandat 125.802 kb on - strandat 125.825 kb on + strandat 125.845 kb on - strandat 125.906 kb on + strandat 125.906 kb on + strandat 125.921 kb on + strandat 125.928 kb on - strandat 126.067 kb on - strandat 126.168 kb on + strandat 126.212 kb on + strandat 126.271 kb on + strand, within HP15_116at 126.291 kb on - strand, within HP15_116at 126.316 kb on + strand, within HP15_116at 126.535 kb on + strand, within HP15_116at 126.542 kb on + strand, within HP15_116at 126.543 kb on - strand, within HP15_116at 126.798 kb on + strand, within HP15_116at 126.824 kb on + strand, within HP15_116at 126.855 kb on + strand, within HP15_116at 126.867 kb on + strand, within HP15_116at 126.867 kb on + strand, within HP15_116at 126.914 kb on + strand, within HP15_116at 126.920 kb on + strand, within HP15_116at 126.962 kb on + strand, within HP15_116at 126.962 kb on + strand, within HP15_116at 126.962 kb on + strand, within HP15_116at 126.970 kb on - strand, within HP15_116at 126.970 kb on - strand, within HP15_116at 126.970 kb on - strand, within HP15_116at 126.975 kb on + strand, within HP15_116at 126.975 kb on + strand, within HP15_116at 127.226 kb on + strand, within HP15_116at 127.286 kb on - strand, within HP15_116at 127.288 kb on - strand, within HP15_116at 127.335 kb on + strand, within HP15_116at 127.428 kb on + strandat 127.428 kb on + strandat 127.428 kb on + strandat 127.432 kb on + strandat 127.467 kb on + strandat 127.468 kb on - strandat 127.475 kb on - strandat 127.476 kb on + strandat 127.489 kb on - strandat 127.552 kb on + strandat 127.552 kb on + strandat 127.552 kb on + strandat 127.552 kb on + strandat 127.560 kb on - strandat 127.560 kb on - strandat 127.564 kb on + strandat 127.574 kb on + strandat 127.577 kb on - strandat 127.577 kb on - strandat 127.619 kb on + strandat 127.619 kb on + strandat 127.654 kb on - strandat 127.711 kb on + strandat 127.870 kb on - strand, within HP15_117at 127.870 kb on - strand, within HP15_117at 127.908 kb on - strand, within HP15_117at 127.932 kb on + strand, within HP15_117at 127.932 kb on + strand, within HP15_117at 128.121 kb on - strand, within HP15_118at 128.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 37C
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125,156 + HP15_115 0.73 +0.6
125,160 - HP15_115 0.73 +0.8
125,164 - HP15_115 0.73 -0.4
125,193 + HP15_115 0.74 +1.1
125,208 + HP15_115 0.75 -0.9
125,224 + HP15_115 0.75 -1.7
125,292 + HP15_115 0.77 +0.0
125,293 + HP15_115 0.77 -0.8
125,301 - HP15_115 0.77 +1.3
125,368 - HP15_115 0.80 -0.2
125,390 + HP15_115 0.80 -1.0
125,390 + HP15_115 0.80 +0.8
125,391 - HP15_115 0.80 +1.3
125,398 - HP15_115 0.80 -0.3
125,426 + HP15_115 0.81 -0.4
125,510 + HP15_115 0.84 -0.5
125,651 + HP15_115 0.88 -0.2
125,715 - +1.1
125,794 + -0.2
125,794 + -0.7
125,802 - +0.3
125,825 + +0.8
125,845 - -0.9
125,906 + -1.0
125,906 + +1.7
125,921 + -0.8
125,928 - -0.5
126,067 - +0.7
126,168 + +0.7
126,212 + -0.3
126,271 + HP15_116 0.12 -0.8
126,291 - HP15_116 0.13 -0.6
126,316 + HP15_116 0.15 +0.8
126,535 + HP15_116 0.31 +0.0
126,542 + HP15_116 0.32 +1.1
126,543 - HP15_116 0.32 +0.6
126,798 + HP15_116 0.50 -0.2
126,824 + HP15_116 0.52 -0.8
126,855 + HP15_116 0.54 -0.3
126,867 + HP15_116 0.55 +0.7
126,867 + HP15_116 0.55 +0.8
126,914 + HP15_116 0.59 +0.8
126,920 + HP15_116 0.59 -0.1
126,962 + HP15_116 0.62 +0.8
126,962 + HP15_116 0.62 -0.3
126,962 + HP15_116 0.62 +0.2
126,970 - HP15_116 0.63 -0.9
126,970 - HP15_116 0.63 -0.7
126,970 - HP15_116 0.63 +0.9
126,975 + HP15_116 0.63 -0.4
126,975 + HP15_116 0.63 -1.0
127,226 + HP15_116 0.82 -0.6
127,286 - HP15_116 0.86 -0.2
127,288 - HP15_116 0.86 -0.5
127,335 + HP15_116 0.90 -0.7
127,428 + -1.7
127,428 + -1.3
127,428 + -1.2
127,432 + +0.9
127,467 + -1.0
127,468 - -0.1
127,475 - +1.2
127,476 + +0.5
127,489 - -0.4
127,552 + +0.6
127,552 + +1.6
127,552 + +0.3
127,552 + -0.3
127,560 - -0.6
127,560 - +0.2
127,564 + +0.0
127,574 + -1.0
127,577 - +0.3
127,577 - -1.4
127,619 + +0.6
127,619 + +1.5
127,654 - -0.6
127,711 + +1.1
127,870 - HP15_117 0.39 -0.5
127,870 - HP15_117 0.39 -0.4
127,908 - HP15_117 0.55 -0.1
127,932 + HP15_117 0.66 +0.5
127,932 + HP15_117 0.66 -0.9
128,121 - HP15_118 0.41 +0.1
128,332 - +1.1

Or see this region's nucleotide sequence