Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_630 and HP15_631 are separated by 17 nucleotides HP15_631 and HP15_632 are separated by 50 nucleotides HP15_632 and HP15_633 are separated by 24 nucleotides HP15_633 and HP15_634 are separated by 27 nucleotides HP15_634 and HP15_635 are separated by 139 nucleotides
HP15_630: HP15_630 - alanine racemase, at 653,273 to 654,349
_630
HP15_631: HP15_631 - conserved hypothetical protein, at 654,367 to 654,723
_631
HP15_632: HP15_632 - hypothetical protein, at 654,774 to 654,893
_632
HP15_633: HP15_633 - dTDP-4-dehydrorhamnose reductase-like protein, at 654,918 to 655,751
_633
HP15_634: HP15_634 - transcriptional regulator, Crp/Fnr family, at 655,779 to 656,528
_634
HP15_635: HP15_635 - 3-oxoacyl-(acyl carrier protein) synthase I, at 656,668 to 657,852
_635
Position (kb) 654
655
656 Strain fitness (log2 ratio) -1
0
1 at 654.375 kb on + strand at 654.607 kb on + strand, within HP15_631 at 654.663 kb on + strand, within HP15_631 at 654.706 kb on + strand at 654.929 kb on + strand at 655.046 kb on + strand, within HP15_633 at 655.344 kb on + strand, within HP15_633 at 655.344 kb on + strand, within HP15_633 at 655.610 kb on + strand, within HP15_633 at 655.959 kb on - strand, within HP15_634 at 656.069 kb on + strand, within HP15_634 at 656.240 kb on - strand, within HP15_634 at 656.271 kb on + strand, within HP15_634 at 656.399 kb on + strand, within HP15_634 at 656.658 kb on - strand at 656.658 kb on - strand at 656.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 654,375 + +0.0 654,607 + HP15_631 0.67 -0.6 654,663 + HP15_631 0.83 +0.9 654,706 + -0.7 654,929 + +0.4 655,046 + HP15_633 0.15 +0.7 655,344 + HP15_633 0.51 +0.9 655,344 + HP15_633 0.51 +1.2 655,610 + HP15_633 0.83 +0.4 655,959 - HP15_634 0.24 -0.6 656,069 + HP15_634 0.39 -0.1 656,240 - HP15_634 0.61 -0.4 656,271 + HP15_634 0.66 -0.6 656,399 + HP15_634 0.83 -0.7 656,658 - -0.6 656,658 - +0.1 656,658 - +0.9
Or see this region's nucleotide sequence