Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3958 and HP15_3959 are separated by 29 nucleotides HP15_3959 and HP15_3960 are separated by 63 nucleotides HP15_3960 and HP15_3961 are separated by 217 nucleotides HP15_3961 and HP15_3962 overlap by 4 nucleotides
HP15_3958: HP15_3958 - rhodanese domain protein, at 4,188,553 to 4,189,401
_3958
HP15_3959: HP15_3959 - cytochrome B561, at 4,189,431 to 4,189,955
_3959
HP15_3960: HP15_3960 - secreted protein, at 4,190,019 to 4,190,372
_3960
HP15_3961: HP15_3961 - two-component transcriptional regulator, winged helix family, at 4,190,590 to 4,191,315
_3961
HP15_3962: HP15_3962 - two-component system sensor histidine kinase, at 4,191,312 to 4,192,730
_3962
Position (kb) 4190
4191 Strain fitness (log2 ratio) -1
0
1
2 at 4189.089 kb on + strand, within HP15_3958 at 4189.101 kb on + strand, within HP15_3958 at 4189.103 kb on + strand, within HP15_3958 at 4189.123 kb on - strand, within HP15_3958 at 4189.128 kb on - strand, within HP15_3958 at 4189.173 kb on + strand, within HP15_3958 at 4189.181 kb on - strand, within HP15_3958 at 4189.181 kb on - strand, within HP15_3958 at 4189.187 kb on + strand, within HP15_3958 at 4189.218 kb on + strand, within HP15_3958 at 4189.218 kb on + strand, within HP15_3958 at 4189.253 kb on - strand, within HP15_3958 at 4189.253 kb on - strand, within HP15_3958 at 4189.336 kb on - strand at 4189.353 kb on - strand at 4189.403 kb on - strand at 4189.428 kb on - strand at 4189.524 kb on + strand, within HP15_3959 at 4189.564 kb on - strand, within HP15_3959 at 4189.564 kb on - strand, within HP15_3959 at 4189.584 kb on + strand, within HP15_3959 at 4189.688 kb on + strand, within HP15_3959 at 4189.701 kb on - strand, within HP15_3959 at 4189.757 kb on - strand, within HP15_3959 at 4189.766 kb on + strand, within HP15_3959 at 4189.790 kb on + strand, within HP15_3959 at 4189.917 kb on - strand at 4189.924 kb on + strand at 4190.022 kb on + strand at 4190.055 kb on - strand, within HP15_3960 at 4190.328 kb on - strand, within HP15_3960 at 4190.398 kb on - strand at 4190.467 kb on + strand at 4190.475 kb on - strand at 4190.487 kb on - strand at 4190.557 kb on + strand at 4190.644 kb on - strand at 4190.751 kb on + strand, within HP15_3961 at 4190.797 kb on - strand, within HP15_3961 at 4190.829 kb on + strand, within HP15_3961 at 4190.911 kb on - strand, within HP15_3961 at 4190.951 kb on + strand, within HP15_3961 at 4190.986 kb on + strand, within HP15_3961 at 4191.056 kb on + strand, within HP15_3961 at 4191.056 kb on + strand, within HP15_3961 at 4191.101 kb on + strand, within HP15_3961 at 4191.148 kb on + strand, within HP15_3961 at 4191.242 kb on + strand, within HP15_3961 at 4191.242 kb on + strand, within HP15_3961 at 4191.250 kb on - strand at 4191.252 kb on + strand at 4191.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 4,189,089 + HP15_3958 0.63 -0.0 4,189,101 + HP15_3958 0.65 +0.4 4,189,103 + HP15_3958 0.65 -1.3 4,189,123 - HP15_3958 0.67 +0.6 4,189,128 - HP15_3958 0.68 -0.6 4,189,173 + HP15_3958 0.73 -0.3 4,189,181 - HP15_3958 0.74 -0.2 4,189,181 - HP15_3958 0.74 -1.3 4,189,187 + HP15_3958 0.75 -0.6 4,189,218 + HP15_3958 0.78 -0.7 4,189,218 + HP15_3958 0.78 +0.5 4,189,253 - HP15_3958 0.82 -0.4 4,189,253 - HP15_3958 0.82 +0.6 4,189,336 - +0.5 4,189,353 - +0.8 4,189,403 - +0.8 4,189,428 - -0.2 4,189,524 + HP15_3959 0.18 +0.9 4,189,564 - HP15_3959 0.25 +0.5 4,189,564 - HP15_3959 0.25 -0.6 4,189,584 + HP15_3959 0.29 +0.4 4,189,688 + HP15_3959 0.49 +0.2 4,189,701 - HP15_3959 0.51 +0.5 4,189,757 - HP15_3959 0.62 +0.0 4,189,766 + HP15_3959 0.64 -0.6 4,189,790 + HP15_3959 0.68 -0.7 4,189,917 - +1.1 4,189,924 + -0.6 4,190,022 + -1.4 4,190,055 - HP15_3960 0.10 -0.4 4,190,328 - HP15_3960 0.87 -0.6 4,190,398 - -0.2 4,190,467 + +0.3 4,190,475 - -0.7 4,190,487 - +2.4 4,190,557 + -0.4 4,190,644 - +0.5 4,190,751 + HP15_3961 0.22 -0.2 4,190,797 - HP15_3961 0.29 +0.7 4,190,829 + HP15_3961 0.33 +1.0 4,190,911 - HP15_3961 0.44 +0.5 4,190,951 + HP15_3961 0.50 -0.5 4,190,986 + HP15_3961 0.55 -0.3 4,191,056 + HP15_3961 0.64 +0.1 4,191,056 + HP15_3961 0.64 -0.5 4,191,101 + HP15_3961 0.70 -0.4 4,191,148 + HP15_3961 0.77 +1.2 4,191,242 + HP15_3961 0.90 -0.5 4,191,242 + HP15_3961 0.90 +0.1 4,191,250 - -0.3 4,191,252 + +0.1 4,191,334 + -0.3
Or see this region's nucleotide sequence