Strain Fitness in Marinobacter adhaerens HP15 around HP15_3838

Experiment: m.b. 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3836 and HP15_3837 are separated by 93 nucleotidesHP15_3837 and HP15_3838 are separated by 6 nucleotidesHP15_3838 and HP15_3839 are separated by 114 nucleotidesHP15_3839 and HP15_3840 are separated by 177 nucleotides HP15_3836: HP15_3836 - hypothetical protein, at 4,063,362 to 4,063,544 _3836 HP15_3837: HP15_3837 - hypothetical spermidine synthase, at 4,063,638 to 4,064,381 _3837 HP15_3838: HP15_3838 - ankyrin-like protein, at 4,064,388 to 4,064,720 _3838 HP15_3839: HP15_3839 - YbhB and YbcL, at 4,064,835 to 4,065,458 _3839 HP15_3840: HP15_3840 - metallophosphoesterase, at 4,065,636 to 4,066,487 _3840 Position (kb) 4064 4065Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4063.422 kb on - strand, within HP15_3836at 4063.494 kb on + strand, within HP15_3836at 4063.507 kb on - strand, within HP15_3836at 4063.554 kb on - strandat 4063.647 kb on - strandat 4063.718 kb on + strand, within HP15_3837at 4063.752 kb on + strand, within HP15_3837at 4063.775 kb on - strand, within HP15_3837at 4063.810 kb on + strand, within HP15_3837at 4063.928 kb on + strand, within HP15_3837at 4063.928 kb on + strand, within HP15_3837at 4063.928 kb on + strand, within HP15_3837at 4063.928 kb on + strand, within HP15_3837at 4063.933 kb on + strand, within HP15_3837at 4063.936 kb on - strand, within HP15_3837at 4063.938 kb on + strand, within HP15_3837at 4063.948 kb on + strand, within HP15_3837at 4063.948 kb on + strand, within HP15_3837at 4063.956 kb on - strand, within HP15_3837at 4064.076 kb on + strand, within HP15_3837at 4064.076 kb on + strand, within HP15_3837at 4064.081 kb on + strand, within HP15_3837at 4064.082 kb on - strand, within HP15_3837at 4064.082 kb on - strand, within HP15_3837at 4064.084 kb on - strand, within HP15_3837at 4064.084 kb on - strand, within HP15_3837at 4064.084 kb on - strand, within HP15_3837at 4064.084 kb on - strand, within HP15_3837at 4064.096 kb on + strand, within HP15_3837at 4064.334 kb on + strandat 4064.358 kb on - strandat 4064.457 kb on - strand, within HP15_3838at 4064.667 kb on - strand, within HP15_3838at 4064.773 kb on + strandat 4064.783 kb on + strandat 4064.783 kb on + strandat 4064.783 kb on + strandat 4064.811 kb on - strandat 4064.825 kb on + strandat 4064.873 kb on - strandat 4064.913 kb on - strand, within HP15_3839at 4064.929 kb on + strand, within HP15_3839at 4064.984 kb on - strand, within HP15_3839at 4065.012 kb on - strand, within HP15_3839at 4065.017 kb on - strand, within HP15_3839at 4065.052 kb on + strand, within HP15_3839at 4065.053 kb on - strand, within HP15_3839at 4065.172 kb on - strand, within HP15_3839at 4065.194 kb on - strand, within HP15_3839at 4065.271 kb on + strand, within HP15_3839at 4065.286 kb on + strand, within HP15_3839at 4065.294 kb on - strand, within HP15_3839at 4065.343 kb on + strand, within HP15_3839at 4065.343 kb on + strand, within HP15_3839at 4065.351 kb on - strand, within HP15_3839at 4065.351 kb on - strand, within HP15_3839at 4065.410 kb on - strandat 4065.419 kb on + strandat 4065.427 kb on - strandat 4065.444 kb on - strandat 4065.461 kb on + strandat 4065.478 kb on + strandat 4065.545 kb on + strandat 4065.555 kb on - strandat 4065.555 kb on - strandat 4065.555 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
remove
4,063,422 - HP15_3836 0.33 -0.2
4,063,494 + HP15_3836 0.72 -0.1
4,063,507 - HP15_3836 0.79 +0.2
4,063,554 - -0.2
4,063,647 - +0.0
4,063,718 + HP15_3837 0.11 +0.9
4,063,752 + HP15_3837 0.15 +0.6
4,063,775 - HP15_3837 0.18 -0.5
4,063,810 + HP15_3837 0.23 +0.1
4,063,928 + HP15_3837 0.39 +0.9
4,063,928 + HP15_3837 0.39 -0.7
4,063,928 + HP15_3837 0.39 -0.2
4,063,928 + HP15_3837 0.39 +0.3
4,063,933 + HP15_3837 0.40 +2.6
4,063,936 - HP15_3837 0.40 -0.2
4,063,938 + HP15_3837 0.40 -0.7
4,063,948 + HP15_3837 0.42 -1.1
4,063,948 + HP15_3837 0.42 -0.2
4,063,956 - HP15_3837 0.43 +0.5
4,064,076 + HP15_3837 0.59 -0.7
4,064,076 + HP15_3837 0.59 +0.8
4,064,081 + HP15_3837 0.60 +0.9
4,064,082 - HP15_3837 0.60 -1.2
4,064,082 - HP15_3837 0.60 -0.4
4,064,084 - HP15_3837 0.60 -0.2
4,064,084 - HP15_3837 0.60 +3.7
4,064,084 - HP15_3837 0.60 +0.4
4,064,084 - HP15_3837 0.60 +0.6
4,064,096 + HP15_3837 0.62 +1.0
4,064,334 + -0.2
4,064,358 - +0.9
4,064,457 - HP15_3838 0.21 -0.5
4,064,667 - HP15_3838 0.84 -0.6
4,064,773 + +0.2
4,064,783 + -0.3
4,064,783 + +0.8
4,064,783 + +1.0
4,064,811 - -0.8
4,064,825 + +0.5
4,064,873 - -2.5
4,064,913 - HP15_3839 0.12 +0.6
4,064,929 + HP15_3839 0.15 +0.4
4,064,984 - HP15_3839 0.24 +0.8
4,065,012 - HP15_3839 0.28 -0.4
4,065,017 - HP15_3839 0.29 +0.5
4,065,052 + HP15_3839 0.35 +0.1
4,065,053 - HP15_3839 0.35 +0.5
4,065,172 - HP15_3839 0.54 -0.7
4,065,194 - HP15_3839 0.58 +0.3
4,065,271 + HP15_3839 0.70 -0.2
4,065,286 + HP15_3839 0.72 -0.2
4,065,294 - HP15_3839 0.74 +0.7
4,065,343 + HP15_3839 0.81 +0.5
4,065,343 + HP15_3839 0.81 -0.3
4,065,351 - HP15_3839 0.83 -2.2
4,065,351 - HP15_3839 0.83 -0.2
4,065,410 - +0.5
4,065,419 + +0.2
4,065,427 - -0.5
4,065,444 - +0.2
4,065,461 + +0.0
4,065,478 + -0.2
4,065,545 + -0.2
4,065,555 - +0.2
4,065,555 - -0.3
4,065,555 - -0.1

Or see this region's nucleotide sequence