Strain Fitness in Marinobacter adhaerens HP15 around HP15_3705

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3704 and HP15_3705 are separated by 128 nucleotidesHP15_3705 and HP15_3706 are separated by 130 nucleotides HP15_3704: HP15_3704 - ABC1 family protein kinase-like protein, at 3,908,616 to 3,909,896 _3704 HP15_3705: HP15_3705 - DNA replication and repair protein recF, at 3,910,025 to 3,911,152 _3705 HP15_3706: HP15_3706 - DNA gyrase subunit B-like protein, at 3,911,283 to 3,913,622 _3706 Position (kb) 3910 3911 3912Strain fitness (log2 ratio) -1 0 1at 3909.073 kb on + strand, within HP15_3704at 3909.210 kb on - strand, within HP15_3704at 3909.210 kb on - strand, within HP15_3704at 3909.210 kb on - strand, within HP15_3704at 3909.316 kb on + strand, within HP15_3704at 3909.320 kb on + strand, within HP15_3704at 3909.418 kb on - strand, within HP15_3704at 3909.876 kb on + strandat 3909.878 kb on + strandat 3909.935 kb on - strandat 3910.183 kb on + strand, within HP15_3705at 3910.191 kb on + strand, within HP15_3705at 3910.345 kb on + strand, within HP15_3705at 3910.410 kb on + strand, within HP15_3705at 3910.574 kb on + strand, within HP15_3705at 3910.806 kb on + strand, within HP15_3705at 3911.019 kb on + strand, within HP15_3705at 3911.080 kb on + strandat 3911.080 kb on + strandat 3911.092 kb on + strandat 3911.192 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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3,909,073 + HP15_3704 0.36 -0.3
3,909,210 - HP15_3704 0.46 +0.7
3,909,210 - HP15_3704 0.46 -0.1
3,909,210 - HP15_3704 0.46 +0.2
3,909,316 + HP15_3704 0.55 +0.4
3,909,320 + HP15_3704 0.55 -0.4
3,909,418 - HP15_3704 0.63 +0.1
3,909,876 + +0.4
3,909,878 + +1.2
3,909,935 - -0.9
3,910,183 + HP15_3705 0.14 -1.3
3,910,191 + HP15_3705 0.15 -1.6
3,910,345 + HP15_3705 0.28 -1.4
3,910,410 + HP15_3705 0.34 +0.3
3,910,574 + HP15_3705 0.49 -0.4
3,910,806 + HP15_3705 0.69 +0.1
3,911,019 + HP15_3705 0.88 -0.3
3,911,080 + -1.2
3,911,080 + +0.1
3,911,092 + -0.4
3,911,192 + +0.6

Or see this region's nucleotide sequence