Strain Fitness in Marinobacter adhaerens HP15 around HP15_34

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_33 and HP15_34 are separated by 137 nucleotidesHP15_34 and HP15_35 are separated by 2 nucleotides HP15_33: HP15_33 - fumarylacetoacetate (FAA) hydrolase, at 37,779 to 38,681 _33 HP15_34: HP15_34 - transcriptional regulator, IclR family, at 38,819 to 39,613 _34 HP15_35: HP15_35 - thiolase, at 39,616 to 40,806 _35 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1at 37.827 kb on + strandat 37.835 kb on - strandat 37.843 kb on - strandat 37.878 kb on + strand, within HP15_33at 37.887 kb on + strand, within HP15_33at 37.887 kb on + strand, within HP15_33at 37.887 kb on + strand, within HP15_33at 37.895 kb on - strand, within HP15_33at 37.937 kb on + strand, within HP15_33at 37.937 kb on + strand, within HP15_33at 37.937 kb on + strand, within HP15_33at 37.940 kb on - strand, within HP15_33at 37.945 kb on - strand, within HP15_33at 37.945 kb on - strand, within HP15_33at 38.002 kb on + strand, within HP15_33at 38.021 kb on + strand, within HP15_33at 38.060 kb on + strand, within HP15_33at 38.074 kb on - strand, within HP15_33at 38.103 kb on + strand, within HP15_33at 38.108 kb on + strand, within HP15_33at 38.108 kb on + strand, within HP15_33at 38.116 kb on - strand, within HP15_33at 38.121 kb on - strand, within HP15_33at 38.168 kb on - strand, within HP15_33at 38.168 kb on - strand, within HP15_33at 38.168 kb on - strand, within HP15_33at 38.228 kb on + strand, within HP15_33at 38.300 kb on + strand, within HP15_33at 38.364 kb on - strand, within HP15_33at 38.394 kb on - strand, within HP15_33at 38.397 kb on + strand, within HP15_33at 38.405 kb on + strand, within HP15_33at 38.410 kb on + strand, within HP15_33at 38.418 kb on + strand, within HP15_33at 38.424 kb on - strand, within HP15_33at 38.499 kb on + strand, within HP15_33at 38.721 kb on + strandat 38.726 kb on + strandat 39.007 kb on - strand, within HP15_34at 39.027 kb on - strand, within HP15_34at 39.043 kb on + strand, within HP15_34at 39.043 kb on + strand, within HP15_34at 39.063 kb on + strand, within HP15_34at 39.071 kb on - strand, within HP15_34at 39.071 kb on - strand, within HP15_34at 39.078 kb on + strand, within HP15_34at 39.086 kb on - strand, within HP15_34at 39.165 kb on + strand, within HP15_34at 39.173 kb on - strand, within HP15_34at 39.173 kb on - strand, within HP15_34at 39.175 kb on - strand, within HP15_34at 39.211 kb on - strand, within HP15_34at 39.228 kb on + strand, within HP15_34at 39.331 kb on + strand, within HP15_34at 39.339 kb on - strand, within HP15_34at 39.552 kb on + strandat 39.595 kb on + strandat 39.607 kb on + strandat 39.615 kb on - strandat 39.684 kb on + strandat 39.692 kb on - strandat 39.700 kb on + strandat 39.752 kb on - strand, within HP15_35at 39.808 kb on + strand, within HP15_35at 39.873 kb on - strand, within HP15_35at 39.876 kb on + strand, within HP15_35at 39.943 kb on + strand, within HP15_35at 40.001 kb on + strand, within HP15_35at 40.014 kb on - strand, within HP15_35at 40.035 kb on + strand, within HP15_35at 40.078 kb on + strand, within HP15_35at 40.084 kb on + strand, within HP15_35at 40.086 kb on - strand, within HP15_35at 40.086 kb on - strand, within HP15_35at 40.165 kb on - strand, within HP15_35at 40.178 kb on - strand, within HP15_35at 40.178 kb on - strand, within HP15_35at 40.217 kb on + strand, within HP15_35at 40.231 kb on - strand, within HP15_35at 40.231 kb on - strand, within HP15_35at 40.335 kb on - strand, within HP15_35at 40.353 kb on - strand, within HP15_35at 40.407 kb on + strand, within HP15_35at 40.415 kb on - strand, within HP15_35at 40.443 kb on + strand, within HP15_35at 40.537 kb on + strand, within HP15_35at 40.537 kb on + strand, within HP15_35at 40.577 kb on + strand, within HP15_35at 40.577 kb on - strand, within HP15_35at 40.584 kb on + strand, within HP15_35at 40.587 kb on - strand, within HP15_35

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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37,827 + -0.6
37,835 - -0.2
37,843 - +0.1
37,878 + HP15_33 0.11 +0.1
37,887 + HP15_33 0.12 -0.2
37,887 + HP15_33 0.12 -0.7
37,887 + HP15_33 0.12 -0.5
37,895 - HP15_33 0.13 +0.3
37,937 + HP15_33 0.17 -0.1
37,937 + HP15_33 0.17 -0.6
37,937 + HP15_33 0.17 -0.1
37,940 - HP15_33 0.18 -0.0
37,945 - HP15_33 0.18 +0.3
37,945 - HP15_33 0.18 -1.2
38,002 + HP15_33 0.25 +0.2
38,021 + HP15_33 0.27 +0.1
38,060 + HP15_33 0.31 +0.7
38,074 - HP15_33 0.33 -0.6
38,103 + HP15_33 0.36 -0.5
38,108 + HP15_33 0.36 +0.0
38,108 + HP15_33 0.36 +0.2
38,116 - HP15_33 0.37 +0.2
38,121 - HP15_33 0.38 -0.4
38,168 - HP15_33 0.43 +0.2
38,168 - HP15_33 0.43 -0.1
38,168 - HP15_33 0.43 +0.5
38,228 + HP15_33 0.50 -0.3
38,300 + HP15_33 0.58 -0.1
38,364 - HP15_33 0.65 +0.4
38,394 - HP15_33 0.68 +1.1
38,397 + HP15_33 0.68 -0.5
38,405 + HP15_33 0.69 -0.6
38,410 + HP15_33 0.70 -0.2
38,418 + HP15_33 0.71 +0.2
38,424 - HP15_33 0.71 +0.4
38,499 + HP15_33 0.80 +0.1
38,721 + +0.1
38,726 + -0.7
39,007 - HP15_34 0.24 -2.4
39,027 - HP15_34 0.26 -0.8
39,043 + HP15_34 0.28 -1.0
39,043 + HP15_34 0.28 -0.8
39,063 + HP15_34 0.31 -1.3
39,071 - HP15_34 0.32 +0.9
39,071 - HP15_34 0.32 -0.4
39,078 + HP15_34 0.33 -0.1
39,086 - HP15_34 0.34 -0.4
39,165 + HP15_34 0.44 -1.5
39,173 - HP15_34 0.45 -0.6
39,173 - HP15_34 0.45 -1.2
39,175 - HP15_34 0.45 -3.1
39,211 - HP15_34 0.49 -0.8
39,228 + HP15_34 0.51 -0.1
39,331 + HP15_34 0.64 +1.3
39,339 - HP15_34 0.65 +0.2
39,552 + -0.3
39,595 + +0.7
39,607 + -1.2
39,615 - +1.3
39,684 + +0.4
39,692 - -0.3
39,700 + -0.4
39,752 - HP15_35 0.11 +0.1
39,808 + HP15_35 0.16 +0.0
39,873 - HP15_35 0.22 -0.0
39,876 + HP15_35 0.22 -0.2
39,943 + HP15_35 0.27 +0.2
40,001 + HP15_35 0.32 +0.2
40,014 - HP15_35 0.33 -0.3
40,035 + HP15_35 0.35 -0.8
40,078 + HP15_35 0.39 -0.2
40,084 + HP15_35 0.39 +0.0
40,086 - HP15_35 0.39 +0.1
40,086 - HP15_35 0.39 -1.9
40,165 - HP15_35 0.46 -0.3
40,178 - HP15_35 0.47 +1.1
40,178 - HP15_35 0.47 -0.1
40,217 + HP15_35 0.50 -0.6
40,231 - HP15_35 0.52 +0.4
40,231 - HP15_35 0.52 +0.5
40,335 - HP15_35 0.60 -0.3
40,353 - HP15_35 0.62 +0.1
40,407 + HP15_35 0.66 -0.5
40,415 - HP15_35 0.67 +1.0
40,443 + HP15_35 0.69 +0.2
40,537 + HP15_35 0.77 +0.7
40,537 + HP15_35 0.77 +0.1
40,577 + HP15_35 0.81 +0.2
40,577 - HP15_35 0.81 +0.4
40,584 + HP15_35 0.81 -0.8
40,587 - HP15_35 0.82 -0.6

Or see this region's nucleotide sequence