Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3100 and HP15_3101 are separated by 3 nucleotides HP15_3101 and HP15_3102 are separated by 580 nucleotides HP15_3102 and HP15_3103 are separated by 0 nucleotides HP15_3103 and HP15_3104 are separated by 29 nucleotides HP15_3104 and HP15_3105 overlap by 4 nucleotides HP15_3105 and HP15_3106 are separated by 81 nucleotides
HP15_3100: HP15_3100 - hypothetical protein, at 3,254,505 to 3,254,801
_3100
HP15_3101: HP15_3101 - hypothetical protein, at 3,254,805 to 3,254,921
_3101
HP15_3102: HP15_3102 - hypothetical protein, at 3,255,502 to 3,255,639
_3102
HP15_3103: HP15_3103 - hypothetical protein, at 3,255,640 to 3,255,933
_3103
HP15_3104: HP15_3104 - hypothetical protein, at 3,255,963 to 3,256,241
_3104
HP15_3105: HP15_3105 - conserved hypothetical protein, at 3,256,238 to 3,256,507
_3105
HP15_3106: HP15_3106 - phage repressor, at 3,256,589 to 3,257,266
_3106
Position (kb)
3255
3256 Strain fitness (log2 ratio)
-1
0
1
2 at 3254.730 kb on - strand, within HP15_3100 at 3255.087 kb on - strand at 3255.089 kb on + strand at 3255.110 kb on - strand at 3255.181 kb on + strand at 3255.258 kb on - strand at 3255.306 kb on + strand at 3255.322 kb on + strand at 3255.322 kb on + strand at 3255.322 kb on - strand at 3255.330 kb on - strand at 3255.418 kb on - strand at 3255.438 kb on - strand at 3255.492 kb on - strand at 3255.514 kb on + strand at 3255.514 kb on + strand at 3255.514 kb on + strand at 3255.676 kb on - strand, within HP15_3103 at 3255.785 kb on + strand, within HP15_3103 at 3255.825 kb on - strand, within HP15_3103 at 3255.844 kb on + strand, within HP15_3103 at 3255.910 kb on - strand at 3255.946 kb on + strand at 3255.946 kb on + strand at 3255.980 kb on + strand at 3255.990 kb on + strand at 3255.990 kb on + strand at 3255.990 kb on + strand at 3255.990 kb on + strand at 3255.998 kb on - strand, within HP15_3104 at 3256.053 kb on + strand, within HP15_3104 at 3256.058 kb on + strand, within HP15_3104 at 3256.072 kb on - strand, within HP15_3104 at 3256.103 kb on + strand, within HP15_3104 at 3256.190 kb on - strand, within HP15_3104 at 3256.229 kb on + strand at 3256.255 kb on + strand at 3256.255 kb on + strand at 3256.263 kb on - strand at 3256.349 kb on + strand, within HP15_3105 at 3256.352 kb on - strand, within HP15_3105 at 3256.396 kb on - strand, within HP15_3105 at 3256.396 kb on - strand, within HP15_3105 at 3256.434 kb on - strand, within HP15_3105 at 3256.451 kb on - strand, within HP15_3105
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 3,254,730 - HP15_3100 0.76 -0.9 3,255,087 - -1.2 3,255,089 + +0.6 3,255,110 - -0.4 3,255,181 + -0.5 3,255,258 - +2.5 3,255,306 + +1.0 3,255,322 + -0.2 3,255,322 + -0.5 3,255,322 - +0.4 3,255,330 - -0.2 3,255,418 - +0.3 3,255,438 - +0.4 3,255,492 - -0.8 3,255,514 + +0.7 3,255,514 + +0.5 3,255,514 + -0.1 3,255,676 - HP15_3103 0.12 -0.7 3,255,785 + HP15_3103 0.49 -0.4 3,255,825 - HP15_3103 0.63 -0.3 3,255,844 + HP15_3103 0.69 -0.4 3,255,910 - -0.9 3,255,946 + +0.6 3,255,946 + -0.2 3,255,980 + +0.6 3,255,990 + -0.4 3,255,990 + -0.3 3,255,990 + +0.9 3,255,990 + -0.3 3,255,998 - HP15_3104 0.13 -0.1 3,256,053 + HP15_3104 0.32 -0.0 3,256,058 + HP15_3104 0.34 +0.0 3,256,072 - HP15_3104 0.39 +0.6 3,256,103 + HP15_3104 0.50 -0.0 3,256,190 - HP15_3104 0.81 +1.3 3,256,229 + -0.4 3,256,255 + -0.5 3,256,255 + -0.4 3,256,263 - +0.1 3,256,349 + HP15_3105 0.41 +0.4 3,256,352 - HP15_3105 0.42 -1.3 3,256,396 - HP15_3105 0.59 -0.4 3,256,396 - HP15_3105 0.59 +0.0 3,256,434 - HP15_3105 0.73 -0.4 3,256,451 - HP15_3105 0.79 +1.6
Or see this region's nucleotide sequence