Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2707 and HP15_2708 are separated by 273 nucleotides HP15_2708 and HP15_2709 are separated by 7 nucleotides HP15_2709 and HP15_2710 overlap by 1 nucleotides
HP15_2707: HP15_2707 - extracellular ligand-binding receptor, at 2,860,092 to 2,861,249
_2707
HP15_2708: HP15_2708 - transcriptional regulator, PaaX family, at 2,861,523 to 2,862,491
_2708
HP15_2709: HP15_2709 - thioesterase family protein, at 2,862,499 to 2,863,008
_2709
HP15_2710: HP15_2710 - L-lactate/malate dehydrogenase, at 2,863,008 to 2,863,931
_2710
Position (kb)
2861
2862
2863 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2860.546 kb on + strand, within HP15_2707 at 2860.546 kb on + strand, within HP15_2707 at 2860.704 kb on - strand, within HP15_2707 at 2860.774 kb on - strand, within HP15_2707 at 2860.861 kb on - strand, within HP15_2707 at 2860.968 kb on + strand, within HP15_2707 at 2861.145 kb on - strand at 2861.239 kb on + strand at 2861.426 kb on - strand at 2861.457 kb on - strand at 2861.519 kb on + strand at 2861.785 kb on + strand, within HP15_2708 at 2861.785 kb on + strand, within HP15_2708 at 2861.785 kb on + strand, within HP15_2708 at 2861.785 kb on + strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2862.018 kb on + strand, within HP15_2708 at 2862.046 kb on + strand, within HP15_2708 at 2862.054 kb on + strand, within HP15_2708 at 2862.062 kb on - strand, within HP15_2708 at 2862.125 kb on + strand, within HP15_2708 at 2862.276 kb on + strand, within HP15_2708 at 2862.307 kb on + strand, within HP15_2708 at 2862.453 kb on + strand at 2862.640 kb on - strand, within HP15_2709 at 2862.714 kb on + strand, within HP15_2709 at 2862.714 kb on + strand, within HP15_2709 at 2863.058 kb on + strand at 2863.066 kb on - strand at 2863.076 kb on - strand at 2863.259 kb on + strand, within HP15_2710 at 2863.321 kb on + strand, within HP15_2710 at 2863.358 kb on + strand, within HP15_2710 at 2863.376 kb on - strand, within HP15_2710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,860,546 + HP15_2707 0.39 -0.5 2,860,546 + HP15_2707 0.39 +0.3 2,860,704 - HP15_2707 0.53 +1.6 2,860,774 - HP15_2707 0.59 +0.5 2,860,861 - HP15_2707 0.66 +0.5 2,860,968 + HP15_2707 0.76 +0.6 2,861,145 - +0.8 2,861,239 + +0.0 2,861,426 - -0.4 2,861,457 - +0.2 2,861,519 + -0.3 2,861,785 + HP15_2708 0.27 +0.5 2,861,785 + HP15_2708 0.27 -0.5 2,861,785 + HP15_2708 0.27 -1.3 2,861,785 + HP15_2708 0.27 -1.1 2,861,793 - HP15_2708 0.28 -1.3 2,861,793 - HP15_2708 0.28 -0.2 2,861,793 - HP15_2708 0.28 +0.0 2,861,793 - HP15_2708 0.28 -0.9 2,861,793 - HP15_2708 0.28 -2.8 2,861,793 - HP15_2708 0.28 -1.9 2,862,018 + HP15_2708 0.51 -1.4 2,862,046 + HP15_2708 0.54 -0.0 2,862,054 + HP15_2708 0.55 -3.0 2,862,062 - HP15_2708 0.56 -1.3 2,862,125 + HP15_2708 0.62 +0.5 2,862,276 + HP15_2708 0.78 -0.4 2,862,307 + HP15_2708 0.81 -1.2 2,862,453 + +0.0 2,862,640 - HP15_2709 0.28 +1.0 2,862,714 + HP15_2709 0.42 +0.1 2,862,714 + HP15_2709 0.42 -0.8 2,863,058 + -0.2 2,863,066 - +0.2 2,863,076 - -0.5 2,863,259 + HP15_2710 0.27 -0.4 2,863,321 + HP15_2710 0.34 -2.2 2,863,358 + HP15_2710 0.38 +0.6 2,863,376 - HP15_2710 0.40 -0.3
Or see this region's nucleotide sequence