Strain Fitness in Marinobacter adhaerens HP15 around HP15_2701

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2699 and HP15_2700 overlap by 17 nucleotidesHP15_2700 and HP15_2701 are separated by 13 nucleotidesHP15_2701 and HP15_2702 are separated by 75 nucleotides HP15_2699: HP15_2699 - phenylacetate-CoA oxygenase, PaaI subunit, at 2,851,326 to 2,852,090 _2699 HP15_2700: HP15_2700 - phenylacetate-CoA oxygenase, PaaJ subunit, at 2,852,074 to 2,852,643 _2700 HP15_2701: HP15_2701 - phenylacetic acid degradation oxidoreductase PaaK, at 2,852,657 to 2,853,736 _2701 HP15_2702: HP15_2702 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase, at 2,853,812 to 2,855,869 _2702 Position (kb) 2852 2853 2854Strain fitness (log2 ratio) -2 -1 0 1at 2851.939 kb on - strand, within HP15_2699at 2851.959 kb on - strand, within HP15_2699at 2851.988 kb on + strand, within HP15_2699at 2852.037 kb on - strandat 2852.207 kb on - strand, within HP15_2700at 2852.231 kb on - strand, within HP15_2700at 2852.301 kb on - strand, within HP15_2700at 2852.590 kb on - strandat 2852.850 kb on + strand, within HP15_2701at 2853.032 kb on - strand, within HP15_2701at 2853.176 kb on - strand, within HP15_2701at 2853.760 kb on + strandat 2854.013 kb on + strandat 2854.042 kb on - strand, within HP15_2702at 2854.242 kb on + strand, within HP15_2702at 2854.370 kb on + strand, within HP15_2702at 2854.596 kb on - strand, within HP15_2702at 2854.597 kb on + strand, within HP15_2702

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,851,939 - HP15_2699 0.80 -1.2
2,851,959 - HP15_2699 0.83 +0.0
2,851,988 + HP15_2699 0.87 +0.5
2,852,037 - -0.5
2,852,207 - HP15_2700 0.23 -1.1
2,852,231 - HP15_2700 0.28 +0.5
2,852,301 - HP15_2700 0.40 -0.7
2,852,590 - -1.2
2,852,850 + HP15_2701 0.18 -0.4
2,853,032 - HP15_2701 0.35 -1.8
2,853,176 - HP15_2701 0.48 -1.3
2,853,760 + +0.0
2,854,013 + +0.3
2,854,042 - HP15_2702 0.11 -0.1
2,854,242 + HP15_2702 0.21 +1.0
2,854,370 + HP15_2702 0.27 +1.5
2,854,596 - HP15_2702 0.38 +0.2
2,854,597 + HP15_2702 0.38 -0.9

Or see this region's nucleotide sequence