Strain Fitness in Marinobacter adhaerens HP15 around HP15_2512

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2511 and HP15_2512 are separated by 15 nucleotidesHP15_2512 and HP15_2513 are separated by 7 nucleotidesHP15_2513 and HP15_2514 are separated by 90 nucleotides HP15_2511: HP15_2511 - phosphatidylserine decarboxylase proenzyme, at 2,651,112 to 2,651,966 _2511 HP15_2512: HP15_2512 - tRNA synthetase, class II (D, K and N), at 2,651,982 to 2,652,950 _2512 HP15_2513: HP15_2513 - translation elongation factor P, at 2,652,958 to 2,653,488 _2513 HP15_2514: HP15_2514 - lysine 2,3-aminomutase YodO family protein, at 2,653,579 to 2,654,619 _2514 Position (kb) 2651 2652 2653Strain fitness (log2 ratio) -2 -1 0 1 2at 2651.031 kb on - strandat 2652.003 kb on + strandat 2652.211 kb on + strand, within HP15_2512at 2652.225 kb on - strand, within HP15_2512at 2652.345 kb on - strand, within HP15_2512at 2652.345 kb on - strand, within HP15_2512at 2652.437 kb on + strand, within HP15_2512at 2652.569 kb on + strand, within HP15_2512at 2652.609 kb on - strand, within HP15_2512at 2652.676 kb on - strand, within HP15_2512at 2652.735 kb on + strand, within HP15_2512at 2652.824 kb on + strand, within HP15_2512at 2652.953 kb on - strandat 2653.661 kb on + strandat 2653.737 kb on - strand, within HP15_2514at 2653.793 kb on - strand, within HP15_2514

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,651,031 - -0.3
2,652,003 + -0.8
2,652,211 + HP15_2512 0.24 -2.1
2,652,225 - HP15_2512 0.25 -0.2
2,652,345 - HP15_2512 0.37 -1.2
2,652,345 - HP15_2512 0.37 +1.8
2,652,437 + HP15_2512 0.47 +0.2
2,652,569 + HP15_2512 0.61 -0.6
2,652,609 - HP15_2512 0.65 -0.2
2,652,676 - HP15_2512 0.72 -1.3
2,652,735 + HP15_2512 0.78 -0.5
2,652,824 + HP15_2512 0.87 -0.9
2,652,953 - -0.5
2,653,661 + -1.2
2,653,737 - HP15_2514 0.15 -1.8
2,653,793 - HP15_2514 0.21 -0.5

Or see this region's nucleotide sequence