Strain Fitness in Marinobacter adhaerens HP15 around HP15_250

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_248 and HP15_249 are separated by 16 nucleotidesHP15_249 and HP15_250 are separated by 28 nucleotidesHP15_250 and HP15_251 are separated by 68 nucleotides HP15_248: HP15_248 - diaminopimelate epimerase, at 236,824 to 237,738 _248 HP15_249: HP15_249 - protein containing DUF484, at 237,755 to 238,501 _249 HP15_250: HP15_250 - site-specific tyrosine recombinase XerC, at 238,530 to 239,462 _250 HP15_251: HP15_251 - diguanylate cyclase, at 239,531 to 241,024 _251 Position (kb) 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1at 237.667 kb on + strandat 237.677 kb on - strandat 237.748 kb on - strandat 237.751 kb on + strandat 237.875 kb on - strand, within HP15_249at 237.935 kb on - strand, within HP15_249at 237.942 kb on + strand, within HP15_249at 238.020 kb on - strand, within HP15_249at 238.153 kb on + strand, within HP15_249at 238.177 kb on - strand, within HP15_249at 238.222 kb on + strand, within HP15_249at 238.381 kb on + strand, within HP15_249at 238.520 kb on - strandat 238.530 kb on - strandat 238.929 kb on - strand, within HP15_250at 239.026 kb on - strand, within HP15_250at 239.031 kb on - strand, within HP15_250at 239.031 kb on - strand, within HP15_250at 239.102 kb on + strand, within HP15_250at 239.112 kb on - strand, within HP15_250at 239.193 kb on + strand, within HP15_250at 239.330 kb on - strand, within HP15_250at 239.330 kb on - strand, within HP15_250at 239.354 kb on + strand, within HP15_250at 239.362 kb on - strand, within HP15_250at 239.548 kb on - strandat 239.605 kb on - strandat 239.630 kb on - strandat 239.663 kb on + strandat 239.844 kb on + strand, within HP15_251at 239.865 kb on - strand, within HP15_251at 239.878 kb on + strand, within HP15_251at 239.883 kb on + strand, within HP15_251at 239.922 kb on - strand, within HP15_251at 240.021 kb on + strand, within HP15_251at 240.021 kb on + strand, within HP15_251at 240.021 kb on + strand, within HP15_251at 240.029 kb on - strand, within HP15_251at 240.029 kb on - strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.104 kb on + strand, within HP15_251at 240.112 kb on + strand, within HP15_251at 240.112 kb on - strand, within HP15_251at 240.112 kb on - strand, within HP15_251at 240.125 kb on - strand, within HP15_251at 240.135 kb on - strand, within HP15_251at 240.206 kb on + strand, within HP15_251at 240.214 kb on + strand, within HP15_251at 240.233 kb on + strand, within HP15_251at 240.236 kb on - strand, within HP15_251at 240.236 kb on - strand, within HP15_251at 240.246 kb on - strand, within HP15_251at 240.263 kb on - strand, within HP15_251at 240.327 kb on + strand, within HP15_251at 240.329 kb on - strand, within HP15_251at 240.357 kb on - strand, within HP15_251at 240.436 kb on + strand, within HP15_251at 240.444 kb on - strand, within HP15_251at 240.444 kb on - strand, within HP15_251at 240.451 kb on + strand, within HP15_251

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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237,667 + +0.1
237,677 - +0.6
237,748 - +1.3
237,751 + +0.1
237,875 - HP15_249 0.16 -1.9
237,935 - HP15_249 0.24 -1.4
237,942 + HP15_249 0.25 +0.1
238,020 - HP15_249 0.35 -0.4
238,153 + HP15_249 0.53 +0.9
238,177 - HP15_249 0.56 -0.7
238,222 + HP15_249 0.63 +0.9
238,381 + HP15_249 0.84 -0.7
238,520 - -0.5
238,530 - -0.4
238,929 - HP15_250 0.43 -2.8
239,026 - HP15_250 0.53 -1.7
239,031 - HP15_250 0.54 -1.1
239,031 - HP15_250 0.54 -0.5
239,102 + HP15_250 0.61 -0.8
239,112 - HP15_250 0.62 -0.9
239,193 + HP15_250 0.71 -1.7
239,330 - HP15_250 0.86 -0.1
239,330 - HP15_250 0.86 -1.9
239,354 + HP15_250 0.88 -0.4
239,362 - HP15_250 0.89 -1.7
239,548 - +0.7
239,605 - -0.3
239,630 - +0.2
239,663 + -1.2
239,844 + HP15_251 0.21 -0.0
239,865 - HP15_251 0.22 +0.4
239,878 + HP15_251 0.23 +0.4
239,883 + HP15_251 0.24 -0.1
239,922 - HP15_251 0.26 -0.0
240,021 + HP15_251 0.33 -0.2
240,021 + HP15_251 0.33 +0.4
240,021 + HP15_251 0.33 -0.2
240,029 - HP15_251 0.33 -0.1
240,029 - HP15_251 0.33 +0.9
240,104 + HP15_251 0.38 -0.1
240,104 + HP15_251 0.38 +0.5
240,104 + HP15_251 0.38 -1.1
240,104 + HP15_251 0.38 +0.4
240,104 + HP15_251 0.38 +0.1
240,112 + HP15_251 0.39 +0.5
240,112 - HP15_251 0.39 -0.0
240,112 - HP15_251 0.39 +0.8
240,125 - HP15_251 0.40 +1.0
240,135 - HP15_251 0.40 -0.7
240,206 + HP15_251 0.45 -0.5
240,214 + HP15_251 0.46 -0.2
240,233 + HP15_251 0.47 +1.1
240,236 - HP15_251 0.47 +0.2
240,236 - HP15_251 0.47 -0.6
240,246 - HP15_251 0.48 +0.7
240,263 - HP15_251 0.49 -0.5
240,327 + HP15_251 0.53 +0.6
240,329 - HP15_251 0.53 +0.7
240,357 - HP15_251 0.55 -0.3
240,436 + HP15_251 0.61 +0.2
240,444 - HP15_251 0.61 +0.1
240,444 - HP15_251 0.61 -2.1
240,451 + HP15_251 0.62 +0.4

Or see this region's nucleotide sequence