Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2415 and HP15_2416 are separated by 95 nucleotides HP15_2416 and HP15_2417 are separated by 112 nucleotides HP15_2417 and HP15_2418 are separated by 180 nucleotides
HP15_2415: HP15_2415 - sensory box sensor histidine kinase/response regulator, at 2,549,872 to 2,552,223
_2415
HP15_2416: HP15_2416 - zinc-binding protein, at 2,552,319 to 2,552,474
_2416
HP15_2417: HP15_2417 - YfaZ family protein, at 2,552,587 to 2,553,144
_2417
HP15_2418: HP15_2418 - conserved hypothetical protein, at 2,553,325 to 2,555,457
_2418
Position (kb)
2552
2553
2554 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2551.607 kb on - strand, within HP15_2415 at 2551.860 kb on + strand, within HP15_2415 at 2551.936 kb on + strand, within HP15_2415 at 2552.004 kb on - strand at 2552.023 kb on - strand at 2552.298 kb on + strand at 2552.364 kb on - strand, within HP15_2416 at 2552.448 kb on - strand, within HP15_2416 at 2552.468 kb on + strand at 2552.476 kb on - strand at 2552.733 kb on + strand, within HP15_2417 at 2552.862 kb on - strand, within HP15_2417 at 2553.309 kb on + strand at 2553.310 kb on - strand at 2553.310 kb on - strand at 2553.319 kb on + strand at 2553.390 kb on - strand at 2553.607 kb on - strand, within HP15_2418 at 2553.667 kb on + strand at 2553.811 kb on - strand, within HP15_2418 at 2553.854 kb on + strand, within HP15_2418 at 2553.904 kb on + strand, within HP15_2418 at 2554.096 kb on + strand, within HP15_2418 at 2554.112 kb on + strand, within HP15_2418 at 2554.112 kb on + strand, within HP15_2418 at 2554.120 kb on - strand, within HP15_2418 at 2554.127 kb on + strand, within HP15_2418 at 2554.127 kb on + strand, within HP15_2418
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,551,607 - HP15_2415 0.74 -3.1 2,551,860 + HP15_2415 0.85 -0.6 2,551,936 + HP15_2415 0.88 -1.8 2,552,004 - -0.4 2,552,023 - -0.6 2,552,298 + -0.3 2,552,364 - HP15_2416 0.29 -0.5 2,552,448 - HP15_2416 0.83 +1.1 2,552,468 + +0.7 2,552,476 - -0.4 2,552,733 + HP15_2417 0.26 -0.6 2,552,862 - HP15_2417 0.49 -2.0 2,553,309 + -0.1 2,553,310 - -0.2 2,553,310 - -0.6 2,553,319 + -0.2 2,553,390 - +0.4 2,553,607 - HP15_2418 0.13 +0.7 2,553,667 + +0.8 2,553,811 - HP15_2418 0.23 +0.6 2,553,854 + HP15_2418 0.25 -0.3 2,553,904 + HP15_2418 0.27 +0.8 2,554,096 + HP15_2418 0.36 -0.1 2,554,112 + HP15_2418 0.37 -0.2 2,554,112 + HP15_2418 0.37 +2.4 2,554,120 - HP15_2418 0.37 +0.4 2,554,127 + HP15_2418 0.38 +0.4 2,554,127 + HP15_2418 0.38 -2.2
Or see this region's nucleotide sequence