Strain Fitness in Marinobacter adhaerens HP15 around HP15_2277

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2275 and HP15_2276 are separated by 2 nucleotidesHP15_2276 and HP15_2277 are separated by 3 nucleotidesHP15_2277 and HP15_2278 are separated by 45 nucleotidesHP15_2278 and HP15_2279 are separated by 40 nucleotidesHP15_2279 and HP15_2280 overlap by 1 nucleotides HP15_2275: HP15_2275 - conserved hypothetical protein, secreted, at 2,399,629 to 2,400,813 _2275 HP15_2276: HP15_2276 - conserved hypothetical protein, at 2,400,816 to 2,401,370 _2276 HP15_2277: HP15_2277 - TPR repeat protein, at 2,401,374 to 2,402,516 _2277 HP15_2278: HP15_2278 - hypothetical protein, at 2,402,562 to 2,402,669 _2278 HP15_2279: HP15_2279 - cytochrome C biogenesis protein CcmH, at 2,402,710 to 2,403,183 _2279 HP15_2280: HP15_2280 - periplasmic protein thiol: disulfide oxidoreductase DsbE, at 2,403,183 to 2,403,719 _2280 Position (kb) 2401 2402 2403Strain fitness (log2 ratio) -1 0 1at 2400.374 kb on - strand, within HP15_2275at 2400.374 kb on - strand, within HP15_2275at 2400.453 kb on - strand, within HP15_2275at 2400.498 kb on + strand, within HP15_2275at 2400.597 kb on - strand, within HP15_2275at 2400.597 kb on - strand, within HP15_2275at 2400.610 kb on + strand, within HP15_2275at 2400.629 kb on - strand, within HP15_2275at 2400.830 kb on - strandat 2400.916 kb on + strand, within HP15_2276at 2401.038 kb on - strand, within HP15_2276at 2401.108 kb on - strand, within HP15_2276at 2401.116 kb on - strand, within HP15_2276at 2401.157 kb on + strand, within HP15_2276at 2401.187 kb on - strand, within HP15_2276at 2401.717 kb on - strand, within HP15_2277at 2401.785 kb on + strand, within HP15_2277at 2401.793 kb on - strand, within HP15_2277at 2401.793 kb on - strand, within HP15_2277

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,400,374 - HP15_2275 0.63 -0.4
2,400,374 - HP15_2275 0.63 -0.3
2,400,453 - HP15_2275 0.70 -0.5
2,400,498 + HP15_2275 0.73 -0.0
2,400,597 - HP15_2275 0.82 +0.3
2,400,597 - HP15_2275 0.82 -0.2
2,400,610 + HP15_2275 0.83 -0.4
2,400,629 - HP15_2275 0.84 -0.3
2,400,830 - -0.2
2,400,916 + HP15_2276 0.18 +1.2
2,401,038 - HP15_2276 0.40 +0.3
2,401,108 - HP15_2276 0.53 -0.1
2,401,116 - HP15_2276 0.54 -0.8
2,401,157 + HP15_2276 0.61 -0.3
2,401,187 - HP15_2276 0.67 -0.2
2,401,717 - HP15_2277 0.30 +0.2
2,401,785 + HP15_2277 0.36 -0.6
2,401,793 - HP15_2277 0.37 -1.5
2,401,793 - HP15_2277 0.37 -1.4

Or see this region's nucleotide sequence