Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2275 and HP15_2276 are separated by 2 nucleotides HP15_2276 and HP15_2277 are separated by 3 nucleotides HP15_2277 and HP15_2278 are separated by 45 nucleotides HP15_2278 and HP15_2279 are separated by 40 nucleotides HP15_2279 and HP15_2280 overlap by 1 nucleotides
HP15_2275: HP15_2275 - conserved hypothetical protein, secreted, at 2,399,629 to 2,400,813
_2275
HP15_2276: HP15_2276 - conserved hypothetical protein, at 2,400,816 to 2,401,370
_2276
HP15_2277: HP15_2277 - TPR repeat protein, at 2,401,374 to 2,402,516
_2277
HP15_2278: HP15_2278 - hypothetical protein, at 2,402,562 to 2,402,669
_2278
HP15_2279: HP15_2279 - cytochrome C biogenesis protein CcmH, at 2,402,710 to 2,403,183
_2279
HP15_2280: HP15_2280 - periplasmic protein thiol: disulfide oxidoreductase DsbE, at 2,403,183 to 2,403,719
_2280
Position (kb)
2401
2402
2403 Strain fitness (log2 ratio)
-1
0
1 at 2400.374 kb on - strand, within HP15_2275 at 2400.374 kb on - strand, within HP15_2275 at 2400.453 kb on - strand, within HP15_2275 at 2400.498 kb on + strand, within HP15_2275 at 2400.597 kb on - strand, within HP15_2275 at 2400.597 kb on - strand, within HP15_2275 at 2400.610 kb on + strand, within HP15_2275 at 2400.629 kb on - strand, within HP15_2275 at 2400.830 kb on - strand at 2400.916 kb on + strand, within HP15_2276 at 2401.038 kb on - strand, within HP15_2276 at 2401.108 kb on - strand, within HP15_2276 at 2401.116 kb on - strand, within HP15_2276 at 2401.157 kb on + strand, within HP15_2276 at 2401.187 kb on - strand, within HP15_2276 at 2401.717 kb on - strand, within HP15_2277 at 2401.785 kb on + strand, within HP15_2277 at 2401.793 kb on - strand, within HP15_2277 at 2401.793 kb on - strand, within HP15_2277
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,400,374 - HP15_2275 0.63 -0.4 2,400,374 - HP15_2275 0.63 -0.3 2,400,453 - HP15_2275 0.70 -0.5 2,400,498 + HP15_2275 0.73 -0.0 2,400,597 - HP15_2275 0.82 +0.3 2,400,597 - HP15_2275 0.82 -0.2 2,400,610 + HP15_2275 0.83 -0.4 2,400,629 - HP15_2275 0.84 -0.3 2,400,830 - -0.2 2,400,916 + HP15_2276 0.18 +1.2 2,401,038 - HP15_2276 0.40 +0.3 2,401,108 - HP15_2276 0.53 -0.1 2,401,116 - HP15_2276 0.54 -0.8 2,401,157 + HP15_2276 0.61 -0.3 2,401,187 - HP15_2276 0.67 -0.2 2,401,717 - HP15_2277 0.30 +0.2 2,401,785 + HP15_2277 0.36 -0.6 2,401,793 - HP15_2277 0.37 -1.5 2,401,793 - HP15_2277 0.37 -1.4
Or see this region's nucleotide sequence